Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 147 5e-30 seq9 105 2e-17 >seq12 Length=1023116 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || ||||| || ||||||||||| ||| || ||| Sbjct 60066 CAGATTTTCGTTAAGACACTGACGGGTAAAACCATAACCCTCGAGGTTGAATCGTCTGAC 60007 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||| ||||||||||||||||| || ||||| || || || Sbjct 60006 ACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAACAG 59947 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || || || ||||| || || || |||| |||| || ||| | Sbjct 59946 AGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAAC-CTTGTCCGACTACAACAT 59888 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || | ||| | || || ||||| ||| Sbjct 59887 CCAAAAGGAATCTACTTTACATTTGGTGTTAAGACTAAGA 59848 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 470038 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCTTCTGAC 470097 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 470098 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAA 470157 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||||| | || || ||| || Sbjct 470158 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTACAACATC 470217 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || |||| | || |||||| | ||| Sbjct 470218 CAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGA 470256 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || ||||| || || | || || ||| || || Sbjct 60750 CAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCTGAT 60691 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||| ||||||||||||||||| || ||||| || ||||| Sbjct 60690 ACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAGCAG 60631 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || || || ||||| || || || |||| |||| || ||| | Sbjct 60630 AGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAAC-CTTGTCCGACTACAACAT 60572 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || || | ||| | || || ||||| ||| Sbjct 60571 CCAAAAGGAGTCCACTTTACATTTGGTGTTAAGACTAAGA 60532 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || ||||||||||| ||| || ||| Sbjct 59838 CAGATCTTTGTTAAGACGCTGACTGGTAAGACCATAACCCTCGAGGTTGAATCGTCTGAC 59779 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||| || ||||| || ||||| ||||| || Sbjct 59778 ACTATTGACAACGTGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAACAG 59719 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| || || | |||| || || | Sbjct 59718 AGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGAACGTTATCCGACTACAATATT 59659 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| ||||| || || || || || || || Sbjct 59658 CAAAAGGAATCCACTCTCCACCTGGTCTTAAG 59627 >seq9 Length=443128 Score = 105 bits (116), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 63083 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 63142 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| || | Sbjct 63143 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 63202 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAA 178107 ||||| || || || || | ||||| || || || |||| | || || ||| | |||| Sbjct 63203 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACATTCAAA 63261 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || | || | || |||||| | ||| Sbjct 63262 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGA 63296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730937812298