Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079055.1_202017-03- 21] 17 sequences; 12,092,810 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12 116 3e-21 >seq12 Length=1023116 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || | ||| | |||||||| ||| | || ||||| || ||||| |||||||| Sbjct 59843 CCACCTCTTAGTCTTAACACCAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 59902 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| | |||| || || ||||| || || || |||| | |||||| || | ||| Sbjct 59903 AAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 59962 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| |||||| | ||| || |||||| ||| || || Sbjct 59963 ATACCTTCTTTGTCC-TGAATTTTTGACTTGACGTTATCAATAGTGTCAGACGATTCAAC 60021 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||||| |||||||||||||| ||||| |||||||||||||| Sbjct 60022 CTCGAGGGTTATGGTTTTACCCGTCAGTGTCTTAACGAAAATCTGCAT 60069 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 41650 TAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTC 41709 ||| ||||| || || ||| ||||| ||||| || |||||||| | || | | || Sbjct 59629 TAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATC 59688 Query 41710 GTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 || || ||||| ||||| || |||| | ||||||||| | |||| | ||||| || Sbjct 59689 TTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATC 59748 Query 41770 CATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 | || || ||||| || | || |||||| ||| || ||||| | ||||| | Sbjct 59749 CTGAATCTTGCTCTTCA-CGTTGTCAATAGTGTCAGACGATTCAACCTCGAGGGTTATGG 59807 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||||| ||||||||||| || || |||||||| Sbjct 59808 TCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 59841 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||| ||||| || |||||||| | || | | || || || ||||| ||||| || Sbjct 60335 TCCTTTTGAATATTGTAGTCGGATAACGTTCTACCATCTTCCAGTTGCTTACCGGCAAAA 60394 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| | ||||||||| | |||| | ||||| || ||| |||| | | ||| Sbjct 60395 ATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCT-TGAATTTTCGACTTGACGTT 60453 Query 41792 GACACA-GTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | || |||||| || || ||||||| || || || ||||| ||||||||||| || Sbjct 60454 GTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAAC 60513 Query 41851 GAAAATCTGCAT 41862 || |||||||| Sbjct 60514 AAAGATCTGCAT 60525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303901760400