Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 4e-15 seq12 93.3 4e-14 >seq10 Length=729272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 ||||||||||||||||| || | ||||| | | || ||| || || || | Sbjct 390122 GAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGA 390181 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || | |||| || |||||||| || || |||||| |||| || Sbjct 390182 CTAGTCGCCTTTGCCTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTC 390241 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | ||||| | || | |||||||| |||| ||| ||||| | || | ||| Sbjct 390242 TGGTTGAAGAAGAGAGGTATGATGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGA 390301 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| ||| |||| ||||||||| || ||| ||||| |||||| Sbjct 390302 GACGAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCATTTG 390349 >seq12 Length=1026045 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || |||||||| || | || |||||| | | Sbjct 54394 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 54335 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| |||||||| |||||||| || || || | || || Sbjct 54334 GATACTATTGATAACG-TCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCA 54276 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || || || ||||| |||| | ||| | ||||||||| Sbjct 54275 ACAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAA 54216 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| |||||| |||| | ||| ||||||| Sbjct 54215 CATCCAAAAGGAGTCCACTTTACATTTAGTGTT 54183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || ||||| || ||| | || || ||| | || Sbjct 53938 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 53879 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| || || || || || || | ||||| Sbjct 53878 GACACTATTGACAACG-TGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCA 53820 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | |||| || || || || ||||| |||| | ||| | ||||||||| Sbjct 53819 ACAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAA 53760 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| |||||| |||| | ||| ||||||| Sbjct 53759 CATCCAAAAGGAGTCCACTTTACATTTAGTGTT 53727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920