Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 seq9 89.7 4e-13 >seq12 Length=1026045 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCG--T 45167 |||||||||||||| || |||||||| || || ||||| ||||| ||||||||| | Sbjct 53940 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGAT 53999 Query 45168 TCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 ||| | | || || ||||| || ||||| || ||||||| ||||||||| |||| Sbjct 54000 AACGTT--CTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAG 54057 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCC 45286 | | ||| ||||| || |||||| ||| | || | || | |||| | || Sbjct 54058 GAATACCTTCCTTATCTTGAATTTTCGACTTGA-CGTTGTCAATCGTGTCGGAAGATTCG 54116 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| ||||| || ||||| ||||| |||||||| ||||| Sbjct 54117 ACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | |||||| || || || | ||| |||||| || |||||||||||| | Sbjct 53712 CCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 53771 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| |||||||| || || || || ||||| | ||||||||| |||| Sbjct 53772 AAGGTT--CTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAG 53829 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| ||||| ||| ||| || ||| || | | |||| | || | Sbjct 53830 GAATACCTTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTCAA 53889 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| | ||| || || || || || ||||| || ||||| |||||||| Sbjct 53890 CCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | |||||| || || || | ||| |||||| || |||||||||||| | Sbjct 54168 CCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 54227 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| |||||||| || || || || ||||| | |||||| || |||| Sbjct 54228 AAGGTT--CTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAG 54285 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| || |||||| ||||||| ||| || | | | || | || | Sbjct 54286 GAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGA 54345 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||| || || || || || |||| |||||| ||||| |||||||| Sbjct 54346 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 >seq9 Length=442403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||||||| || || ||||| | ||| || || |||||||||||||| | Sbjct 64040 CCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 63981 Query 45170 A--GTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAG 45227 | ||| | | |||| |||| ||| || || || || ||||| | |||||||| || | Sbjct 63980 AAGGTT--CTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 63923 Query 45228 GCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCA 45287 | | ||| |||||||| ||| ||| ||| || | | |||| | || | Sbjct 63922 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 63863 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAA 45327 | |||| || || ||||| || |||| |||||| ||||| Sbjct 63862 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 63823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075118145357