Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 113 3e-20 seq9 105 5e-18 >seq12 Length=1026045 Score = 113 bits (124), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| || || ||||| ||||||||||||| || ||| ||| ||||||| | Sbjct 54191 ATGTAAAGTG--GACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGT 54248 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 || || || ||| |||| | ||| |||||||| || | ||||| || || |||| Sbjct 54249 TGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATT 54308 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | | |||||| | ||| ||| ||| | ||| ||| | || ||| |||| ||| Sbjct 54309 TTTGACTTGACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCG 54368 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || || |||||||||||||| Sbjct 54369 GTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | ||||||| Sbjct 469420 ACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCC 469361 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 469360 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 469301 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 469300 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTA 469241 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 469240 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 469209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| || || ||||| ||||||||||||| || ||| ||| ||||||| | Sbjct 53735 ATGTAAAGTG--GACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGT 53792 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT- 18238 || || || ||| |||| | ||| ||||| || || | ||||||||||| ||| Sbjct 53793 TGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCCTGAATC 53852 Query 18239 TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCC 18298 ||| | ||| || | ||| |||||| | || || | ||| || |||| || Sbjct 53853 TTGCT-CTTCACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTACC 53911 Query 18299 GGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||||||| Sbjct 53912 AGTTAGAGTTTTGACAAAAATTTGCAT 53938 >seq9 Length=442403 Score = 105 bits (116), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||||||||||||||||||||| | || ||| ||| |||||||||| Sbjct 64016 TGTAAAGTG--GATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATT 63959 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | |||||||| || ||| | Sbjct 63958 GCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCT 63899 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||||| | ||| ||||||| | || ||| | |||||| | || || | Sbjct 63898 TTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAG 63839 Query 18301 TCAATGTTTTTACAAAA 18317 |||| || || |||||| Sbjct 63838 TCAAAGTCTTGACAAAA 63822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665