Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 232 6e-56 seq10 190 2e-43 seq9 156 4e-33 seq12 98.7 9e-16 >seq5 Length=553973 Score = 232 bits (256), Expect = 6e-56 Identities = 414/600 (69%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || |||| |||||||| || ||||||||||| |||| || | || || Sbjct 294548 TTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACG 294489 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| ||| ||||||| | | ||| | ||| || || | || |||||||| Sbjct 294488 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCA 294429 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || ||||| | |||||| ||||| ||||| || || || ||||| ||||| ||||| Sbjct 294428 TGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 294369 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||| || | || | | ||| || | | ||||| || | ||| | || Sbjct 294368 GGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACC 294309 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||||| ||| |||| || || | || | ||| || || || | | Sbjct 294308 AGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGT 294249 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || |||| || |||| ||||| ||||||||| || |||||||| |||||| || Sbjct 294248 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 294189 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | |||||||||||||| || |||||||| | ||| || ||| | || |||| || Sbjct 294188 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 294129 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || ||| || ||||||||| ||||||| || || || || | || || || Sbjct 294128 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTC 294069 Query 23821 AATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 |||| |||| ||||| || || | ||||| | ||| || | || ||| || | ||| Sbjct 294068 GATGT-CTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGG 294010 Query 23880 C--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | ||| ||||| ||| | | | ||| ||||||| || |||||||| ||||| || Sbjct 294009 CCACTTGA--CCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAGTA 293952 >seq10 Length=729272 Score = 190 bits (210), Expect = 2e-43 Identities = 481/722 (67%), Gaps = 17/722 (2%) Strand=Plus/Plus Query 57591 GCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 || |||||||| || ||||||| |||||| | || ||||||||||| | |||||| Sbjct 389795 GCCGAAGCATCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGATTGG 389854 Query 57651 GATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 | | | || ||| |||||| ||||||| || | || ||||||||| Sbjct 389855 AACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCC 389914 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || ||||||||||| || || ||||| |||| || || ||||| ||||| Sbjct 389915 GCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTTCAAGTT 389974 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | | || || || || ||| | |||||||| | ||||| |||| Sbjct 389975 CCAGAGGCAAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACC 390034 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGA---CTGTTC 57884 || || | | |||||||| ||| | |||||| | | || || || | ||||| Sbjct 390035 TACTCCTTGTTGATCGATACCTACATTAAGGAC-CCTA--AGGAAAGTGAATTTTTGTTC 390091 Query 57885 AACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA 57944 || || || | || || || | |||| ||||||| |||||| | | | |||||| Sbjct 390092 AATGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATT 390151 Query 57945 AAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATA 58004 || ||| ||| ||| | || || ||| |||| || ||| | |||||||| | Sbjct 390152 CAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGTGTC 390211 Query 58005 TTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGC 58064 ||||| || || ||| || | || || ||| ||||||| | || |||||||||| Sbjct 390212 TTCTTCTCCGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGT 390271 Query 58065 CTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124 |||| || ||||| ||||| | | ||||| ||| | || || || ||||| ||| Sbjct 390272 TTGACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCATGC 390331 Query 58125 CTAATGTACTCTCACATTGTCAATAAACC-GACGCGGGATCGCATCTTG--GACATTATC 58181 | ||| | | || | || ||||| ||| | | | | ||| | ||| || Sbjct 390332 TTGTTGTTCGCCCATTTGAAGAACAAACCAGACCC---AGCCATTGTTGAAAAAATTGTC 390388 Query 58182 ACCGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 |||||||| || | || ||| || || | || || ||| | || || ||| |||| Sbjct 390389 ACCGAGGCTGTGGAAATTGAACAAAGA-TACTTCTTGGATGCCTTGCCAGTTGCCTTGCT 390447 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||||||||| ||| | ||| | ||| ||||||| ||||| |||||||||||| | Sbjct 390448 AGGTATGAACGCTGACCTAATGAACCAATACGTTGAGTTCGTTGCTGACAGACTTTTGGT 390507 Query 58301 CG 58302 || Sbjct 390508 CG 390509 >seq9 Length=442403 Score = 156 bits (172), Expect = 4e-33 Identities = 418/639 (65%), Gaps = 0/639 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||| ||| |||||||||| || || ||||| ||||| ||| | || | || || Sbjct 240143 TTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAGGGAATAAATCCCTTGCACG 240202 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || | | ||| | | ||| | |||||| || | || || ||||| Sbjct 240203 AATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCGTGCCA 240262 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | | ||| |||||| || || |||||||| ||||| || || || || ||||| Sbjct 240263 TGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTGTTGCCTCCTTGGTCCACATAACG 240322 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || |||||| | || | | ||| || | | || || || | ||| || Sbjct 240323 AGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACC 240382 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | |||||| | | || | ||||| || || | ||| | || || | | Sbjct 240383 GGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGT 240442 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || |||| ||||| ||| || || || || || || ||| || || Sbjct 240443 CTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTT 240502 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | | |||||| ||||||||||| | | || ||| | || || | || Sbjct 240503 CATGGCAATTAGGAAACATGAAGACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGT 240562 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| ||||| || || |||| ||||| | |||||| || | | | | ||| Sbjct 240563 TGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAATTGTAGGTCTTCAGCACAGAATC 240622 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || || ||||| ||||| | || || ||||| | || || || || | || | Sbjct 240623 GATATCACTACCGTGGATACCTAGCGCCACACGCATAACCAAGTGCTGTGGCCGTTCTGC 240682 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | ||||| | | | | || ||| ||||| | || || || || |||||||| Sbjct 240683 CACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAAGTCTTGAACCCAAAATACGT 240742 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || || || | ||||| ||| |||||||| ||||| Sbjct 240743 ATACTTGAAATCTCTATCGTACACGATGGCCGAGTTCAA 240781 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || |||||| |||| || || || ||||| | || |||||| | || |||| | | Sbjct 63822 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 63881 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | | |||||||||| | || || ||||| || | Sbjct 63882 TGACAATGTCAAGTCAAAGATTCAAG-ACAAGGAAGGTATCCCACCTGACCAACAAAGAT 63940 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || ||||| || || ||||||||| || || || || || |||||||||| Sbjct 63941 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAA 64000 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||| | || | || | ||| |||| || |||| Sbjct 64001 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTA 64042 >seq12 Length=1026045 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| || ||| | || |||||| | ||| Sbjct 53938 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 53879 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || ||| |||||||| | || || ||||| Sbjct 53878 GACACTATTGACAACGTGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCAGACCAA 53819 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||||||| || || || ||| || ||| Sbjct 53818 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 53759 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||| | ||| | || | ||||| || || |||| Sbjct 53758 ATCCAAAAGGAGTCCACTTTACATTTAGTGTTAAGACTAAGAGGTGGTA 53710 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 469209 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 469268 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 469269 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 469328 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || |||||||| | ||| || || || Sbjct 469329 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTAC 469388 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 469389 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 469439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| | || Sbjct 54394 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 54335 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | ||||| | ||| |||||| ||||| | || || || || Sbjct 54334 GATACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAA 54275 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||||||| || || || ||| || ||| Sbjct 54274 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 54215 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||| | ||| | || | ||||| || || |||| Sbjct 54214 ATCCAAAAGGAGTCCACTTTACATTTAGTGTTAAGACTAAGAGGTGGTA 54166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640