Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 154 3e-32 seq10 145 2e-29 seq5 104 5e-17 >seq15 Length=1061158 Score = 154 bits (170), Expect = 3e-32 Identities = 368/559 (66%), Gaps = 47/559 (8%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| ||| |||||| || || |||| | | || | | ||||| ||||| | Sbjct 448473 ATTTGGGACGGTAATGGATCCCGTGAATATCTAGATAAGATGGGGTTCACAGATAGGAAA 448414 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||| |||||||| ||||| || |||||||||||| | ||||| || ||| |||| | Sbjct 448413 GTGGGGGATTTGGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGCGCTAAATACAAG 448354 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT------GGCCA---ATATA 35503 || ||| | ||| ||| ||||| |||||||||||||||| || || ||| | Sbjct 448353 ACGTGTGATGACGACTATGCTGGACAGGGTATTGATCAATTGAAGCAGGTCATTCATAAA 448294 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 |||||||| |||||| |||||||||| || ||||||| || |||||||| Sbjct 448293 CTAAAGAC---------AAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAATCCA 448243 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGCT 35623 ||| || || |||||||| || ||||||||||| | ||||||||||| | Sbjct 448242 GCTGATTTTGACAAGATGGCTCTGCCACCATGCCACATTTTCTCACAATTTTATGTCAGT 448183 Query 35624 ---------AATGGAGA---AT---------------TGTCGTGCCAGTTGTATCAGCGA 35656 | ||||| || | || || ||| || || || Sbjct 448182 TTCCCCAAAGAAGGAGACGGATCTGGTAAGCCCCGCCTTTCATGTTTGTTATACCAACGT 448123 Query 35657 AGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCAT 35716 | || | || ||||||||||| || |||||||||||||| |||| ||||| Sbjct 448122 TCTTGTGACATGGGCTTGGGCGTGCCATTTAATATTGCATCATATGCTCTGTTGACTAGA 448063 Query 35717 CTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCA 35776 |||| || | | || | | | || || |||||||| | ||||| || || ||| Sbjct 448062 ATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAGTTTATTCATACTCTGGGGGATGCA 448003 Query 35777 CACATTTATAATACCCACATTGAGGTGTT-AAAGAAGCAGTTGTGCCGCGTCCCTAGACC 35835 || ||||||| ||||||||| | || |||||| || | | | | || ||||| Sbjct 448002 CATGTTTATAAGGACCACATTGAAGCCTTGAAAGAA-CAAATCACCAGAGATCCAAGACC 447944 Query 35836 ATTCCCTAAGTTGAGGATT 35854 |||||| || ||| |||| Sbjct 447943 ATTCCCGAAACTGAAGATT 447925 >seq10 Length=729272 Score = 145 bits (160), Expect = 2e-29 Identities = 339/506 (67%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 101859 AGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACTAA 101915 |||||| |||||||| | | ||||| ||| | | ||| ||| | ||| | Sbjct 390123 AGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGAC 390182 Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 | || |||||||| | | ||||| ||||||| ||| | ||||| |||||||||| Sbjct 390183 TAGTCGCCTTTGCCTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTCT 390242 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| || ||||| |||| ||| | |||| ||| || || || |||| || | Sbjct 390243 GGTTGAAGAAGAGAGGTATGATGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGAG 390302 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 |||||||| | || ||||||||||||| || |||| | |||| || | Sbjct 390303 ACGAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---AC 390355 Query 102096 CATCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | | ||| || ||| ||| |||||||||| || || || |||||||||| | Sbjct 390356 AAACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGA 390415 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | || | | || |||| ||| || | || |||||| | | |||| ||| Sbjct 390416 TACTTCTTGGATGCCTTGCCAGTTGCCTTGCTAGGTATGAACGCTGACCTAATGAACCAA 390475 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATA 102269 ||| |||| || || || || | ||| ||||| | | || || ||||| |||| | Sbjct 390476 TACGTTGAGTTCGTTGCTGACAGACTTTTGGTCGCCTTCGGTAACAAGAAA--TACTACA 390533 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | || ||||||||| || ||||| || || ||| | | |||||||||||| | Sbjct 390534 AGGTCGAAAACCCCTTCGACTTTATGGAAAACATCTCCTTGGCTGGTAAGACCAACTTCT 390593 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCAA 102355 |||||||||||||| | || || ||| Sbjct 390594 TTGAAAAGAGAGTCTCTGATTACCAA 390619 >seq5 Length=553973 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 94188 AGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCA 94247 ||||||||| || || || |||||||| |||| | | ||||| ||||||||| ||| Sbjct 294860 AGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCA 294801 Query 94248 CAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTATC 94307 || ||||| |||||||||| || | |||| ||||||||||||||| ||| | ||| Sbjct 294800 TAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATC 294741 Query 94308 CTTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| | ||| ||||||| || ||||| Sbjct 294740 TTTATAAACGACAAAAGGTGTACCCGTTTC 294711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583784456235