Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03-
21] 17 sequences; 11,881,637 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 179 3e-40
seq5 178 1e-39
seq10 149 6e-31
>seq9
Length=442403
Score = 179 bits (198), Expect = 3e-40
Identities = 974/1543 (63%), Gaps = 43/1543 (3%)
Strand=Plus/Plus
Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179
|||| | |||||| || || || || || ||||| || || | | | || || ||
Sbjct 239235 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 239294
Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239
||| |||||| | | || |||| | | |||||||| || || ||||| |||
Sbjct 239295 GAAGTCACTGGTTCGAAACATTCGTTATATCCAAGAATTTGAGAAGTTGAGGCAGTTGGC 239354
Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA--GTT 37297
||||| || ||| | ||||| ||||||||| | ||| |||| ||| |||
Sbjct 239355 ATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGGTT 239414
Query 37298 CATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACC 37355
| ||||||||| | | | ||| || | || |||||| ||| |||||||||||||
Sbjct 239415 --TCCCAATCCCACATACCAAATGGCTTAGCATT--CCACATGTCAAATTGTAGAATACC 239470
Query 37356 TTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCA 37415
||| ||||||||| | | | || ||| || | | | || | ||| ||
Sbjct 239471 CTTAGAGGCTGGAGAACCTTCGAAAGTAGAATACTTACCTTCCTTCTGTGCCAATTCACA 239530
Query 37416 ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC 37475
| ||| || | |||| ||| || ||||||||||| ||| | || || ||| ||
Sbjct 239531 GGAGGCTTCAAGAGTAGCATGATAAATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGC 239590
Query 37476 TTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACC 37535
|||||| || || | | || | ||| | ||| |||| ||| ||||||||
Sbjct 239591 TTCTTCTGATTCAAAAGGGAGACGCAGCATCATATAGGTATCGGCCAGACCTTGAACACC 239650
Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595
| | || |||||||| || |||| || | | ||| ||||||||||||||
Sbjct 239651 CAAGGCAATAGGTCTATGCCTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATT 239710
Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTAT-TCTCAACTTG 37653
|| || | | | || | | || | || | | ||| | |||| | | ||||
Sbjct 239711 ACGGTCGATGACTCTGTTCA-AGTTATGGGTAATGACTTTAGCAATTTCATGTAAACTC- 239768
Query 37654 TCGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA------------ 37695
||||| || | || | | | ||| || || | ||| || ||
Sbjct 239769 TCGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGGGC 239827
Query 37696 -ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754
||||| |||||||||| || || ||||||| | | | | | | || ||
Sbjct 239828 AATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATTTCACA 239887
Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814
||| | || ||| |||| || ||||| || ||| || | ||| | ||||| |
Sbjct 239888 ACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTACATGC 239947
Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874
|| || || | || | || || ||| |||| |||| || | | ||| | | |||
Sbjct 239948 GTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCATACCA 240007
Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATAT 37932
||| || ||||||| | | |||| | ||| | |||||| |||||
Sbjct 240008 TAACTTTTGGGCTTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATAT 240062
Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992
| | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | |
Sbjct 240063 AGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAAT 240122
Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052
| || ||| |||| | || || |||| |||||| | ||||| | ||| | |||
Sbjct 240123 AAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCA 240182
Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112
| |||||||| | | | | |||||| || || | ||||| | | |||
Sbjct 240183 GGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAG 240242
Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172
||||| ||||| |||||||||||||| | ||| | | || || ||||| || |
Sbjct 240243 TCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTGTTG 240302
Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232
||||| || | | ||| | | | || || || | | | | |||||| | | |||
Sbjct 240303 CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCA 240362
Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292
|| || | ||||| |||||| ||||||| ||| | | || || || | ||
Sbjct 240363 TTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGA 240422
Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352
| || | ||||||||| || || || | ||| |||| ||| || |||||| | |||
Sbjct 240423 AGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATA 240482
Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412
||||| ||| ||||||||| || | | || ||||| ||||||||| || ||||
Sbjct 240483 CCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGTGGA 240542
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || ||||||||||| || || || || || |||| || || |||| ||||
Sbjct 240543 GTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAATTG 240602
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|| || | | ||| ||| ||||||| ||||| |||||||| | || | ||| | |
Sbjct 240603 TAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCATAACC 240662
Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592
| || ||||| | |||| | || | ||| || | || | |||||| || ||
Sbjct 240663 AAGTGCTGTGGCCGTTCTGCCACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAA 240722
Query 38593 GTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633
|| || | |||||||| |||| ||| |||||||||||||
Sbjct 240723 GTCTTGAACCCAAAATACGTATACTTGA--AATCTCTATCGTA 240763
>seq5
Length=553973
Score = 178 bits (196), Expect = 1e-39
Identities = 414/622 (67%), Gaps = 2/622 (0%)
Strand=Plus/Minus
Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072
||| || || | ||| || | ||| || | ||||| |||| ||| |||||| | | |
Sbjct 294548 TTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACG 294489
Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132
| |||||| || || |||||||| | | |||||| || |||||||| |||||
Sbjct 294488 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCA 294429
Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192
|||||| | || | | | || || |||||||| | ||| ||||| | | ||| |
Sbjct 294428 TGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 294369
Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252
| ||||||||| | | | | ||| || | || || ||||| | |||||| ||||
Sbjct 294368 GGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACC 294309
Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312
| || |||| ||| | | || |||||| || | || || ||||| |||
Sbjct 294308 AGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGT 294249
Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372
||| || || ||||| |||| ||| || || || | ||||| || ||| ||| |||||
Sbjct 294248 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 294189
Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432
|| | | | |||||| ||||||||||| |||||| || || ||||| || ||
Sbjct 294188 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 294129
Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492
||||| ||||| | || ||||| |||| | ||||||||||||| | | ||
Sbjct 294128 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTC 294069
Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552
|| || | ||||| || || || | || ||||| | | |||||||| | |||
Sbjct 294068 GATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGC 294009
Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612
| || | || | | |||| ||| || ||| || ||||| | ||||| |||||
Sbjct 294008 CACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAGTAACT 293949
Query 38613 ATA-TGAATAATCTCTATCGTA 38633
|| || | ||||||| || ||
Sbjct 293948 GTACTGGA-AATCTCTGTCATA 293928
Score = 167 bits (184), Expect = 2e-36
Identities = 533/815 (65%), Gaps = 15/815 (2%)
Strand=Plus/Minus
Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873
||||| | || ||||||| || ||||| || || || | ||| |||| ||||||
Sbjct 295765 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 295706
Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933
||||||||||| || || || | || || | | | | ||| || |||
Sbjct 295705 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAACAAATTCAAGGAATGA 295646
Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993
||| || ||| | || | ||||||||||| | | ||| ||||| || ||
Sbjct 295645 GATTGGTCGATATAAACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 295586
Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050
||||| || ||||| |||| | || | | | ||| | || | ||| ||||||
Sbjct 295585 TCCCAGACAGTTTTGTATAAATCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 295526
Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108
|| || || ||| | ||| | | | ||| || | | || ||| ||| | | |
Sbjct 295525 GAGCCGTTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 295468
Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168
| || | || || || || || ||||| || || || || ||||| || | | |
Sbjct 295467 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 295408
Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228
|| |||||| ||| |||||||| | ||||||| || |||||||| ||||| |
Sbjct 295407 AGTACATATTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 295348
Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTC 37285
||||||||||||||||||| || | ||| | |||| | ||||| | || | ||
Sbjct 295347 ATGCAGTAGGCATTGGTGCCATGGTCAAAGAGT--TTCTAATACCATGCTTCATGACATC 295290
Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATAT 37344
| | | | | || ||||||||| | | || ||||| || || ||||||| |
Sbjct 295289 TTTCCTCAAAGT-ATCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCGAAC 295232
Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404
|| || ||||||| | ||||||||| | | | || || || ||||||| ||| |
Sbjct 295231 TGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGA 295172
Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464
|||||||| ||| || ||| | | ||||| ||| |||||||| || ||||| ||||||
Sbjct 295171 GCTAGTTCACAAGAAGCTTCCATAGAGGCATGATAAATTGTTTCAAAGATTTGGATATTT 295112
Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524
| || || ||||| ||| || | | | | || || || |||||||||
Sbjct 295111 AGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAA 295052
Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584
|| |||||||| | | | || ||||||||| || |||| ||||| || |||| ||
Sbjct 295051 CCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACA 294992
Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATT 37619
|| || ||||| ||| || | | | |||| |||
Sbjct 294991 GGGTAGTAATTACGATCAATAACTCTGTTTAAATT 294957
>seq10
Length=729272
Score = 149 bits (164), Expect = 6e-31
Identities = 397/601 (66%), Gaps = 22/601 (4%)
Strand=Plus/Minus
Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680
|||| || || ||||| || || |||||||||||||| | || | ||| |||||
Sbjct 390339 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 390280
Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740
|| || || |||||||||| |||| || || | ||| || || | || || |||||
Sbjct 390279 AAGGTCAAACCGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCG 390220
Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800
|| ||||| | || || | || ||||| || |||| |||||| ||| | | ||
Sbjct 390219 GAGAAGAAGACACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 390160
Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852
|| || |||||| || ||||| || || |||| || ||| | || |
Sbjct 390159 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATGG 390105
Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910
| | || || || || ||| ||| |||| || || | | || ||||| ||
Sbjct 390104 TGTGAATGGCATTGAACAAAA--ATTCACTTTCCTTAGGGTCCTTAATGTAGGTATCGAT 390047
Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970
|| || || |||| |||||||||||||| || ||||| || ||||||||||
Sbjct 390046 CAACAAGGAGTAGGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATAGAAACT 389987
Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030
|||||||| | || || || | || |||| | || || ||||| |||||
Sbjct 389986 CTTTGCCTCTGGAACTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 389927
Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090
||| ||| || || ||||| || || | ||||| || | |||| ||| ||
Sbjct 389926 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 389868
Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146
| || || | |||||||| | ||| || || ||||| | ||||||| ||||||| |
Sbjct 389867 TCATTCTGTTGTTCCAATCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 389808
Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206
|| ||| | | | ||||| || |||||| ||||| ||||| |||||||||| ||
Sbjct 389807 AAGATGCTTCGGCACGCTTATAAGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAA 389748
Query 12207 C 12207
|
Sbjct 389747 C 389747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524700438480
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