Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 179 3e-40 seq5 178 1e-39 seq10 149 6e-31 >seq9 Length=442403 Score = 179 bits (198), Expect = 3e-40 Identities = 974/1543 (63%), Gaps = 43/1543 (3%) Strand=Plus/Plus Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 |||| | |||||| || || || || || ||||| || || | | | || || || Sbjct 239235 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 239294 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| |||||| | | || |||| | | |||||||| || || ||||| ||| Sbjct 239295 GAAGTCACTGGTTCGAAACATTCGTTATATCCAAGAATTTGAGAAGTTGAGGCAGTTGGC 239354 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA--GTT 37297 ||||| || ||| | ||||| ||||||||| | ||| |||| ||| ||| Sbjct 239355 ATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGGTT 239414 Query 37298 CATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACC 37355 | ||||||||| | | | ||| || | || |||||| ||| ||||||||||||| Sbjct 239415 --TCCCAATCCCACATACCAAATGGCTTAGCATT--CCACATGTCAAATTGTAGAATACC 239470 Query 37356 TTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCA 37415 ||| ||||||||| | | | || ||| || | | | || | ||| || Sbjct 239471 CTTAGAGGCTGGAGAACCTTCGAAAGTAGAATACTTACCTTCCTTCTGTGCCAATTCACA 239530 Query 37416 ACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGC 37475 | ||| || | |||| ||| || ||||||||||| ||| | || || ||| || Sbjct 239531 GGAGGCTTCAAGAGTAGCATGATAAATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGC 239590 Query 37476 TTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACC 37535 |||||| || || | | || | ||| | ||| |||| ||| |||||||| Sbjct 239591 TTCTTCTGATTCAAAAGGGAGACGCAGCATCATATAGGTATCGGCCAGACCTTGAACACC 239650 Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595 | | || |||||||| || |||| || | | ||| |||||||||||||| Sbjct 239651 CAAGGCAATAGGTCTATGCCTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATT 239710 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTAT-TCTCAACTTG 37653 || || | | | || | | || | || | | ||| | |||| | | |||| Sbjct 239711 ACGGTCGATGACTCTGTTCA-AGTTATGGGTAATGACTTTAGCAATTTCATGTAAACTC- 239768 Query 37654 TCGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA------------ 37695 ||||| || | || | | | ||| || || | ||| || || Sbjct 239769 TCGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGGGC 239827 Query 37696 -ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 ||||| |||||||||| || || ||||||| | | | | | | || || Sbjct 239828 AATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATTTCACA 239887 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 ||| | || ||| |||| || ||||| || ||| || | ||| | ||||| | Sbjct 239888 ACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTACATGC 239947 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 || || || | || | || || ||| |||| |||| || | | ||| | | ||| Sbjct 239948 GTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCATACCA 240007 Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATAT 37932 ||| || ||||||| | | |||| | ||| | |||||| ||||| Sbjct 240008 TAACTTTTGGGCTTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATAT 240062 Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992 | | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | | Sbjct 240063 AGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAAT 240122 Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 | || ||| |||| | || || |||| |||||| | ||||| | ||| | ||| Sbjct 240123 AAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCA 240182 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 | |||||||| | | | | |||||| || || | ||||| | | ||| Sbjct 240183 GGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAG 240242 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||| ||||| |||||||||||||| | ||| | | || || ||||| || | Sbjct 240243 TCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTGTTG 240302 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| || | | ||| | | | || || || | | | | |||||| | | ||| Sbjct 240303 CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCA 240362 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 || || | ||||| |||||| ||||||| ||| | | || || || | || Sbjct 240363 TTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGA 240422 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | || | ||||||||| || || || | ||| |||| ||| || |||||| | ||| Sbjct 240423 AGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATA 240482 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 ||||| ||| ||||||||| || | | || ||||| ||||||||| || |||| Sbjct 240483 CCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGTGGA 240542 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || ||||||||||| || || || || || |||| || || |||| |||| Sbjct 240543 GTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAATTG 240602 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || || | | ||| ||| ||||||| ||||| |||||||| | || | ||| | | Sbjct 240603 TAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCATAACC 240662 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | || ||||| | |||| | || | ||| || | || | |||||| || || Sbjct 240663 AAGTGCTGTGGCCGTTCTGCCACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAA 240722 Query 38593 GTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 || || | |||||||| |||| ||| ||||||||||||| Sbjct 240723 GTCTTGAACCCAAAATACGTATACTTGA--AATCTCTATCGTA 240763 >seq5 Length=553973 Score = 178 bits (196), Expect = 1e-39 Identities = 414/622 (67%), Gaps = 2/622 (0%) Strand=Plus/Minus Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 ||| || || | ||| || | ||| || | ||||| |||| ||| |||||| | | | Sbjct 294548 TTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACG 294489 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 | |||||| || || |||||||| | | |||||| || |||||||| ||||| Sbjct 294488 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCA 294429 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | || | | | || || |||||||| | ||| ||||| | | ||| | Sbjct 294428 TGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 294369 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | ||||||||| | | | | ||| || | || || ||||| | |||||| |||| Sbjct 294368 GGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACC 294309 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 | || |||| ||| | | || |||||| || | || || ||||| ||| Sbjct 294308 AGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGT 294249 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || || ||||| |||| ||| || || || | ||||| || ||| ||| ||||| Sbjct 294248 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 294189 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 || | | | |||||| ||||||||||| |||||| || || ||||| || || Sbjct 294188 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 294129 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 ||||| ||||| | || ||||| |||| | ||||||||||||| | | || Sbjct 294128 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTC 294069 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552 || || | ||||| || || || | || ||||| | | |||||||| | ||| Sbjct 294068 GATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGC 294009 Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 | || | || | | |||| ||| || ||| || ||||| | ||||| ||||| Sbjct 294008 CACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAGTAACT 293949 Query 38613 ATA-TGAATAATCTCTATCGTA 38633 || || | ||||||| || || Sbjct 293948 GTACTGGA-AATCTCTGTCATA 293928 Score = 167 bits (184), Expect = 2e-36 Identities = 533/815 (65%), Gaps = 15/815 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| || ||||| || || || | ||| |||| |||||| Sbjct 295765 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 295706 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || || || | || || | | | | ||| || ||| Sbjct 295705 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAACAAATTCAAGGAATGA 295646 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 ||| || ||| | || | ||||||||||| | | ||| ||||| || || Sbjct 295645 GATTGGTCGATATAAACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 295586 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 ||||| || ||||| |||| | || | | | ||| | || | ||| |||||| Sbjct 295585 TCCCAGACAGTTTTGTATAAATCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 295526 Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108 || || || ||| | ||| | | | ||| || | | || ||| ||| | | | Sbjct 295525 GAGCCGTTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 295468 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | || | || || || || || ||||| || || || || ||||| || | | | Sbjct 295467 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 295408 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || |||||| ||| |||||||| | ||||||| || |||||||| ||||| | Sbjct 295407 AGTACATATTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 295348 Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTC 37285 ||||||||||||||||||| || | ||| | |||| | ||||| | || | || Sbjct 295347 ATGCAGTAGGCATTGGTGCCATGGTCAAAGAGT--TTCTAATACCATGCTTCATGACATC 295290 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATAT 37344 | | | | | || ||||||||| | | || ||||| || || ||||||| | Sbjct 295289 TTTCCTCAAAGT-ATCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCGAAC 295232 Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404 || || ||||||| | ||||||||| | | | || || || ||||||| ||| | Sbjct 295231 TGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGA 295172 Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 |||||||| ||| || ||| | | ||||| ||| |||||||| || ||||| |||||| Sbjct 295171 GCTAGTTCACAAGAAGCTTCCATAGAGGCATGATAAATTGTTTCAAAGATTTGGATATTT 295112 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 | || || ||||| ||| || | | | | || || || ||||||||| Sbjct 295111 AGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAA 295052 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || |||||||| | | | || ||||||||| || |||| ||||| || |||| || Sbjct 295051 CCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACA 294992 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATT 37619 || || ||||| ||| || | | | |||| ||| Sbjct 294991 GGGTAGTAATTACGATCAATAACTCTGTTTAAATT 294957 >seq10 Length=729272 Score = 149 bits (164), Expect = 6e-31 Identities = 397/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || || ||||| || || |||||||||||||| | || | ||| ||||| Sbjct 390339 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 390280 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || |||||||||| |||| || || | ||| || || | || || ||||| Sbjct 390279 AAGGTCAAACCGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCG 390220 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 || ||||| | || || | || ||||| || |||| |||||| ||| | | || Sbjct 390219 GAGAAGAAGACACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 390160 Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 || || |||||| || ||||| || || |||| || ||| | || | Sbjct 390159 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATGG 390105 Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || ||| ||| |||| || || | | || ||||| || Sbjct 390104 TGTGAATGGCATTGAACAAAA--ATTCACTTTCCTTAGGGTCCTTAATGTAGGTATCGAT 390047 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 || || || |||| |||||||||||||| || ||||| || |||||||||| Sbjct 390046 CAACAAGGAGTAGGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATAGAAACT 389987 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 389986 CTTTGCCTCTGGAACTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 389927 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 ||| ||| || || ||||| || || | ||||| || | |||| ||| || Sbjct 389926 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 389868 Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | || || | |||||||| | ||| || || ||||| | ||||||| ||||||| | Sbjct 389867 TCATTCTGTTGTTCCAATCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 389808 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 || ||| | | | ||||| || |||||| ||||| ||||| |||||||||| || Sbjct 389807 AAGATGCTTCGGCACGCTTATAAGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAA 389748 Query 12207 C 12207 | Sbjct 389747 C 389747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480