Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq12 118 8e-22 seq9 89.7 4e-13 >seq12 Length=1026045 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | ||||||||| ||||||| ||| ||| ||||| || || || ||| Sbjct 54167 ACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 54226 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||| ||| || || ||||| ||||| | || || || |||| Sbjct 54227 CAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGG 54286 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| || ||||||| ||||| || ||| |||||| | | || || Sbjct 54287 AATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGAC 54346 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| |||||||| ||||| |||||||| Sbjct 54347 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 102 bits (112), Expect = 6e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 43886 AATCATCAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTA 43945 ||||| ||| || ||||| ||||| |||| || || ||| || ||||||||||| Sbjct 53475 AATCAATTACCACCCCTCAACCTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTG 53534 Query 43946 TAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGG 44005 || ||| ||| | |||| |||| ||| || || ||||| ||||||| || ||| Sbjct 53535 TAGTCGGATAACGTTCTGCCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGG 53594 Query 44006 TCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCC 44065 || |||| | |||||| |||||| |||||| ||||| | ||| || || | Sbjct 53595 TCTGGAGGAATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAA 53654 Query 44066 GGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 53655 GATTCGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 53710 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| || || || || ||||||||||| || ||| Sbjct 53939 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGA 53998 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| || | ||| || || ||||| ||||||| || ||||| |||| Sbjct 53999 TAACGTTCTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGG 54058 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| |||||| ||||| | ||| || || | | || || Sbjct 54059 AATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGAC 54118 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 54119 CTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| || | || || ||||| || || || || Sbjct 469439 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 469380 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | | || |||| |||||||| || || ||||| ||||| | ||| ||||| | | Sbjct 469379 CAGAGTTCTGC-CATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 469321 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||| || ||| || || ||||| | ||| ||| || | | || | Sbjct 469320 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 469261 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | ||||| || ||||||||||||||||| || || |||||||| Sbjct 469260 CTTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 469212 >seq9 Length=442403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || |||| ||| ||||||||||| || || || Sbjct 64041 ACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 63982 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 63981 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 63922 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | ||| ||| || | | || || Sbjct 63921 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 63862 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || | || || || ||||| || |||||||| ||||| Sbjct 63861 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 63823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777526494516