Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 176 1e-38 seq10 167 5e-36 seq9 138 3e-27 seq11 132 1e-25 >seq12 Length=1026045 Score = 176 bits (194), Expect = 1e-38 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | |||| |||||| || || || || || || || ||||| Sbjct 53709 ATACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCG 53768 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| ||||| || |||||||| || | |||||||| || ||| Sbjct 53769 GACAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGA 53828 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||||||| ||||| || || || || | || ||| || ||| Sbjct 53829 GGAATACCTTCCTTATCCTGAATC-TTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTC 53887 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| |||||||| || ||||| ||||| || ||||| Sbjct 53888 AACCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 Score = 161 bits (178), Expect = 2e-34 Identities = 154/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || |||||||| ||||| |||| ||||| || ||||| ||||| || || Sbjct 53970 GTAGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATCTTCAAGTTGCTTACCG 54029 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | ||||||||| || ||||| || ||||| ||||| ||||| || | || Sbjct 54030 GCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTCGACTTG 54089 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || ||| ||||| || ||||| ||||||||||| || || Sbjct 54090 ACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTC 54149 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 54150 TTAACAAAGATCTGCAT 54166 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || |||||||| ||||| |||| ||||| || ||||| ||||| || || Sbjct 53514 GTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATCTTCCAGTTGCTTACCG 53573 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | ||||||||| || ||||| || ||||| ||||| ||||| || | || Sbjct 53574 GCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTCGACTTG 53633 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || ||| ||||| || ||||| ||||||||||| || || Sbjct 53634 ACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTC 53693 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 53694 TTAACAAAGATCTGCAT 53710 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||||||| || | |||| |||||| || || || || || || || ||||| Sbjct 54165 ATACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCG 54224 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| ||||| || |||||||| || | ||||||||||| ||| Sbjct 54225 GACAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGA 54284 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||| |||| || || || || | ||||| || ||| Sbjct 54285 GGAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCG 54344 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || ||||| || | || || ||||| || ||||| Sbjct 54345 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || |||||||| || || || || |||||||| |||||||| || ||||| | ||| Sbjct 469414 TGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGC 469355 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 469354 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTG 469295 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || ||||| |||||||||||||| || Sbjct 469294 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTACCGGTT 469235 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 469234 AAAGTCTTGACGAAAATTTGCATCTTG 469208 >seq10 Length=729272 Score = 167 bits (184), Expect = 5e-36 Identities = 376/556 (68%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC-TTAATAGATTG 268812 |||| || ||||| ||||| | |||||| | ||| ||||| | || || || ||||| Sbjct 389795 GCCGAAGCATCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCAT-GATTG 389853 Query 268813 GAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || || ||| | || || ||| ||||| ||| ||||||| ||||| || Sbjct 389854 GAACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGC 389913 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||| ||||| ||||| ||||| | || || || |||| || || || | Sbjct 389914 CGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTTCAAGT 389973 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| || || | |||| || || ||||| || || |||||||||||||| || | Sbjct 389974 TCCAGAGGCAAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAAC 390033 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 ||| | || || ||||| || || ||| || ||| |||| ||||| Sbjct 390034 CTACTCCTTGTTGATCGATACCTACAT------TAAGGACCCTAAGGAAAGTGAATTTTT 390087 Query 269050 -TTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGA 269099 ||| ||| | || || | | | ||||||| | || |||||||| | Sbjct 390088 GTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAGTGGGCTCTAA 390143 Query 269100 AATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAG 269156 |||||| | || | |||||| || ||||| |||| || |||||| || | | Sbjct 390144 GATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCG 390203 Query 269157 AAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTA 269216 ||||| | ||||| || || || || ||| | || || ||||||||||| ||||| | | Sbjct 390204 AAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGA 390263 Query 269217 TGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACT 269276 |||| || || || ||||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct 390264 TGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACT 390323 Query 269277 TCGCTTGTTTATTATT 269292 | || || || || || Sbjct 390324 TTGCATGCTTGTTGTT 390339 >seq9 Length=442403 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| ||||| || |||||||| ||||| || |||||| Sbjct 64043 ATACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCA 63984 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 63983 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 63924 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 63923 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 63864 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | || || ||||| Sbjct 63863 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 63823 >seq11 Length=679893 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 629547 ATACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 629606 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| |||||| |||||||| | ||| || || ||||| || | || ||||| ||||| Sbjct 629607 GATAAAGTTCTGCCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGT 629666 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| | || ||||| || | ||| || || ||| Sbjct 629667 GGGATACCTTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCA 629726 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||| || || ||||||||||| Sbjct 629727 ACTTCTAAAGTGATGGTCTTACCAGT 629752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398149211036