Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15 123 3e-23 seq2 113 5e-20 >seq15 Length=1061158 Score = 123 bits (136), Expect = 3e-23 Identities = 299/451 (66%), Gaps = 35/451 (8%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | |||| || || || ||||| ||| ||||| || || |||||||| Sbjct 447964 TTGTTCTTTCAAGGCTTCAATGTGGTCCTTATAAACATGTGCATCCCCCAGAGTATGAAT 448023 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| |||||||| | ||| || ||| ||| |||||| | || || | ||||| || Sbjct 448024 AAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAGAGCATATGA 448083 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTG--ATAACAT---TGA 6984 || | |||||| || || || || ||||| || || | ||| |||||| ||| Sbjct 448084 TGCAATATTAAATGGCACGCCCAAGCCCATGTCACAAGAACGTTGGTATAACAAACATGA 448143 Query 6985 CAAGA------TAAAATATTG-------TCTATAG---------CATAAAATTGACACAA 7022 | | || | || ||| | | |||||||||| | || Sbjct 448144 AAGGCGGGGCTTACCAGATCCGTCTCCTTCTTTGGGGAAACTGACATAAAATTGTGAGAA 448203 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | || ||||| || | | | || || | ||||| ||||||||||||| |||| | Sbjct 448204 AATGTGGCATGGTGGCAGAGCCATCTTGTCAAAATCAGCTGGATTCCAAGCACTCATAAT 448263 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTT-TGTTATAATTATTTG---TAATTGAT 7138 ||| | |||||||| |||||||| |||| ||| || ||| | || ||||||| Sbjct 448264 AATTCTTCTATCATAAGGATTTGTCTTTAGTTTATG----AATGACCTGCTTCAATTGAT 448319 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 | |||||||| || |||| | || ||| | | || ||||| || ||||| |||| Sbjct 448320 CAATACCCTGTCCAGCATAGTCGTCATCACACGTCTTGTATTTAGCGCCGAAATGCCTCC 448379 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACC 7229 |||| || ||||||| || || ||||| || Sbjct 448380 ATTGGAATCCATAAACGGGCCCCAAATCCCC 448410 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| || ||||| || | || | ||| |||| ||||| || ||||| ||| | Sbjct 588607 GTTAAAGTTCGTGTAAGAACTACAAAGGTTCCTCAAATTGGTGACAAATTTGCCTCTCGT 588548 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 | |||||| || || |||||| | |||||| |||||||||||| ||||| | Sbjct 588547 CACGGTCAAAAGGGTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACAGCA 588488 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || |||||| | || ||||| || || ||| ||||| ||| ||||| Sbjct 588487 GAAGGTATTGTTCCGGATTTAATCATTAATCCTCACGCTATTCCATCTCGTATGAC 588432 >seq2 Length=800085 Score = 113 bits (124), Expect = 5e-20 Identities = 385/591 (65%), Gaps = 32/591 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||||||| || ||||| ||| || Sbjct 387375 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAATTTACTAAAATTTTTAGAAGA 387316 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGG---CTGTAAACAT 164514 || ||||| | || |||| | | ||| |||| | || || | ||| Sbjct 387315 GCTTTTGCAAGTCGAATTTTTCCGCCTTCAGTCATAGAAAAGCTGGGTATCTCT---CAT 387259 Query 164515 ATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGC 164574 | ||||| | ||||| | || ||||| ||| ||||| || ||||| || || Sbjct 387258 GTTAAAGGTTTGTTATTGTACGGTCCTCCGGGTACTGGTAAGACCTTAATTGCAAGAAAG 387199 Query 164575 ATTGCT-CAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATT 164630 |||| | ||| | | ||| | || || ||||| || || ||||||||| | || Sbjct 387198 ATTGGTACAA--TGCTGAATGCCAAAGAGCCC--AAAATCGTGAACGGTCCTGAAATTTT 387143 Query 164631 GAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGA 164690 || || || || ||| ||||| | ||| || | || || || |||| ||||||| Sbjct 387142 GAGTAAGTACGTTGGTTCTTCAGAGGAAAATATTCGTAATTTATTCAAGGATGCTGAAGC 387083 Query 164691 AGAACAAAAGAAAGC--AGGTTTAGCTAGTAAA-TTACATGTTATTGTTTTTGATGAGAT 164747 |||| | | || ||| | || | |||||| | ||| |||| ||||| | Sbjct 387082 AGAATATCGG---GCCAAGGGTGAGGAATCCTCCTTACATATCATTATTTTCGATGAACT 387026 Query 164748 AGATGCTCTTTGCAAAAA---------ACGTGGTGATAATATTATTCATGATG-CAGTG- 164796 ||| || ||| ||| | | | |||||| || | | || || || Sbjct 387025 GGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACCGGTGTAGGTGACAATGT 386966 Query 164797 -GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 |||||||| || | ||||||| |||||||| || || ||||||||||| || | Sbjct 386965 AGTTAATCAATTATTAGCTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTAT 386906 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||||||||||| |||||||| ||| |||| | ||||| || ||| |||| || Sbjct 386905 TGGTATGACCAACCGTAAGGATTTAATAGATAGTGCTCTTTTACGTCCAGGTAGATTTGA 386846 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | | || | ||||| ||||| || || ||||| | ||||||||||| Sbjct 386845 AGTCCAAGTTGAAATTCATTTACCGGATGAAAAAGGAAGACTTCAAATTTT 386795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871873377200