Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 230 6e-55 seq15 120 8e-22 >seq5 Length=553973 Score = 230 bits (254), Expect = 6e-55 Identities = 1039/1627 (64%), Gaps = 55/1627 (3%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | ||||| ||| |||||||| |||| || || || ||||| ||| Sbjct 294111 TTTACTCATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCT 294170 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | |||||||| || || ||||||||||| | ||||| | || | Sbjct 294171 TG-TTTCTTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGA 294229 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | |||||||| | ||| || || |||||| || ||||| ||| ||||| | Sbjct 294230 ATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATCCATAATATTCGTTC 294289 Query 363726 ACAGAACAG----TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGC 363781 ||| | ||||||| || ||| || ||| || ||| | |||||||| Sbjct 294290 ----AACTGGTTCTTACATTGCTGGTACAAACGGTACCTCTAACGGGTTAATTCCCATGA 294345 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGG 363839 ||||||| ||| | || || || | || |||||||||||||| | |||| | || Sbjct 294346 TTCGTGTTTTTAATAACACCGCCCGTTATGTCGACCAGGGTGGTAACAAAAGACC--TGG 294403 Query 363840 GGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCG 363899 || ||||| |||| || || || ||||| ||||||||||| ||| |||| || | Sbjct 294404 CGCCTTTGCCCTGTACCTGGAACCATGGCATGCTGATATTTTTGATTTTATTGATATCAG 294463 Query 363900 GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || ||| || ||||| ||| | |||||| | ||| |||| ||| || ||| || | Sbjct 294464 AAAGAACCACGGTAAAGAAGAAATTCGTGCAAGAGATTTGTTTCCTGCTCTATGGATTCC 294523 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 || | ||| |||||||| || || | | || |||| | | || | ||| | Sbjct 294524 CGATCTTTTCATGAAGCGTGTCGAAGAGAATGGGACTTGGACTTTGTTCTCTCCAACAGC 294583 Query 364020 ATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATG 364078 ||| ||||| ||| ||| | || ||||| | || |||||||| || | Sbjct 294584 CGCTCCTGGTCTAAGCGACTGT-TACGGCGACGAGTTTGAAGCTCTATATACCCGCTACG 294642 Query 364079 AATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATG 364137 || | ||| | | | ||||||| ||| || || || |||||| | |||| || Sbjct 294643 AA----AAAGAAGGTCGTGGTAAGACCATTAAGGCTCAAAAATTATGGTATTCCATTTTG 294698 Query 364138 GATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAG 364197 || | || | ||| || || ||||| | | | | || |||||| | |||||| | ||| Sbjct 294699 GAAGCACAAACTGAAACGGGTACACCTTTTGTCGTTTATAAAGATGCTTGCAACAGAAAG 294758 Query 364198 TCCAACCAGCAGCACCTTGGT----ACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 || ||||| | || | ||| ||| ||| || ||| |||| || ||| | Sbjct 294759 TCTAACCAAAAAAACTTAGGTGTCATCAAGTCATCA----AACTTATGCTGTGAAATTGT 294814 Query 364254 TGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGC 364313 ||| ||| | ||||| ||||| ||||| || |||||| | || || | || | || || Sbjct 294815 TGAGTACTCAGCTCCGGACGAAACTGCTGTTTGTAACTTGGCTTCTGTTGCCTTGCCAGC 294874 Query 364314 GT---TTGTAA------AAGATGG---TACTTTTGACCACCAGCATC-----TTTATGAC 364356 || ||| || | || || |||| | || || | || ||| || Sbjct 294875 GTTCATTGAAACGTCAGAGGACGGCCAAACTTCT-ACATACAACTTCAAAAAATTA-CAC 294932 Query 364357 GTAA---CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCA 364413 | || || | || |||| | ||| | ||| ||||| || ||||| || || Sbjct 294933 GAAATTGCCAAAGTTGTTACTCGTAATTTAAACAGAGTTATTGATCGTAATTACTACCCT 294992 Query 364414 ATTCCTGAAGCCGAG-CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGG 364472 || |||| |||| | || |||||| | ||| | || |||| | | ||||| || || Sbjct 294993 GTTGAAGAAG-CGAGAAGATCCAATATGAGACATAGACCAATTGCTTTGGGTGTTCAAGG 295051 Query 364473 CCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCT 364532 | |||||| ||| ||| |||| | | |||||||| || || ||| | || Sbjct 295052 TTTGGCTGACACTTTCATGTTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACT 295111 Query 364533 AAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC 364592 ||||| | |||||||||||||| ||| |||| | ||| ||||| ||||| | || Sbjct 295112 AAATATCCAAATCTTTGAAACAATTTATCATGCCTCTATGGAAGCTTCTTGTGAACTAGC 295171 Query 364593 AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCA 364652 ||| | ||| ||| || | | || || || ||| || || | | | || Sbjct 295172 TCAAAAGGACGGACCATACGAAACCTTCCAAGGTTCTCCAGCTTCTCAAGGTATACTTCA 295231 Query 364653 GTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAA 364712 ||| ||| | ||| | | || | | | ||| | |||||||| | | | Sbjct 295232 GTTCGATATGTGGGACCAAAAACCCTACGGCATGTGGGATTGGGATACTTTGAGGAAAGA 295291 Query 364713 CGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTAC 364772 || | ||||||||||| | | ||||| | | || || ||||| || || || || Sbjct 295292 TGTCATGAAGCATGGTATTAGAAACTCTTTGACCATGGCACCAATGCCTACTGCATCCAC 295351 Query 364773 TGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACG 364832 | || || | || | || || || || ||||| |||| |||| | || || || Sbjct 295352 ATCCCAAATATTGGGTTATAATGAATGTTTTGAACCAGTTACCTCCAATATGTACTCCCG 295411 Query 364833 CCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGA 364892 || || | ||||| ||||| | || || || ||| || | ||| | || Sbjct 295412 TCGTGTCTTATCCGGTGAATTCCAAGTTGTGAACCCTTACTTACTGCGCGATTTGGTTGA 295471 Query 364893 CCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCA 364952 || | |||| ||| | ||||| | ||| | || | || || || | || Sbjct 295472 TTTAGGTATTTGGGATGAGGGTATGAAACAGTATTTGATTACACAGAACGGCTCCATTCA 295531 Query 364953 GAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTC 365012 | ||| ||||| |||| ||||| | | |||||||| || ||||||||||| Sbjct 295532 AGGTTTACCAAATGTTCCACAAGAATTGAAGGATTTATACAAAACTGTCTGGGAAATTTC 295591 Query 365013 -CATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 || | ||| ||||| | ||||| |||||||| || || |||| || || | Sbjct 295592 ACAAAAG-ACTATCATTAACATGGCAGCCGATCGTTCTGTTTATATCGACCAATCTCATT 295650 Query 365072 CGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | || || | ||| || | ||||| | ||||| ||| |||||||| |||| Sbjct 295651 CCTTGAATTTGTTCTTGCGTGCCCCAACTATGGGTAAGCTAACAAGTATGCATTTTTACG 295710 Query 365132 GGTGGAA 365138 ||||||| Sbjct 295711 GGTGGAA 295717 >seq15 Length=1061158 Score = 120 bits (132), Expect = 8e-22 Identities = 209/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | ||||||| || ||| || | | Sbjct 448480 TGTTAAGATTTGGGACGGTAATGGATCCCGTGAATATCTAGATA-AGATGGGGTTCACAG 448422 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | ||| || ||| | || || ||||| ||||| |||||| | || || || || Sbjct 448421 ATAGGAAAGTGGGGGATTTGGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGCGCTA 448362 Query 111538 ACTACAAAACC----ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAAT 111593 | ||||| || ||| |||||| ||| | |||||| | ||||||||| || | Sbjct 448361 AATACAAGACGTGTGATG-ACGACT---ATGCTGGACAGGGTATTGATCAATTGAAGCAG 448306 Query 111594 GTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 |||||| || || | |||| || || | | | | |||||||||||||| ||||| Sbjct 448305 GTCATTCATAAACTAAAGACAAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAAT 448246 Query 111654 CCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 ||| || || || || ||||| || |||||||| || || | | || |||||||| Sbjct 448245 CCAGCTGATTTTGACAAGATGGCTCTGCCACCATGCCACATTTTCTCACAATTTTATGT 448187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353316113294