Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12 95.1 1e-14 >seq12 Length=1026045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | ||||| ||||| || ||| ||||||||| || ||||| || | Sbjct 53711 ACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 53770 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||||||||| || || | || ||| ||||| | || Sbjct 53771 CAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAGG 53830 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| | || | | ||| | | | |||||| ||||| | Sbjct 53831 AATACCTTCCTTATCC-TGAATCTTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTCAA 53889 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || || ||||| || ||||| || || ||||| |||||||| Sbjct 53890 CCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||||| | ||||| ||||| || ||| ||||||||| || ||||| || | Sbjct 54167 ACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 54226 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | |||| || || ||||||||||| || || | || ||| || || | || Sbjct 54227 CAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGG 54286 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||||| ||| |||||| |||| | | | || || ||||| | Sbjct 54287 AATACCTTCTTTGTCC-TGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGA 54345 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || | ||||| ||||| |||||||| Sbjct 54346 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||| || | || ||||||||||||||||| || | Sbjct 53939 ACCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGA 53998 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 | || | | || || || |||||||| || || || | | ||| ||||| | || Sbjct 53999 TAACGTTCTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGG 54058 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCC 42158 | | ||||| | | ||| |||| | |||| ||| | | | ||||||| ||||| Sbjct 54059 AATACCTTCCTTAT-CTTGAATTTTCGACTTGA-CGTTGTCAATCGTGTCGGAAGATTCG 54116 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || |||||||| |||||||| ||||| Sbjct 54117 ACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| || | ||| ||||| ||||| || |||||||| || ||||| |||| Sbjct 469439 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGA 469380 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 |||||| | | || || | ||||||||||| || || | || || ||||| | ||| Sbjct 469379 CAGAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 469320 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||| ||| || |||| | | | ||||| ||||| || Sbjct 469319 GATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 469260 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | || || || || || |||| ||||| || || |||||||| || Sbjct 469259 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 469209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212684567280