Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq12 116 4e-21 seq11 89.7 6e-13 >seq12 Length=1026045 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| || | ||| |||| || | ||| |||||||| ||||||||||||||| Sbjct 53940 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGAT 53999 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | | || || || ||||| ||||| || ||||| | ||| ||||| | || Sbjct 54000 AACGTTCTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGA 54059 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||||| || || ||| ||||| ||| | | | ||||||| ||||| || Sbjct 54060 ATACCTTCCTTATCTTGAATTTTCGACTTGA-CGTTGTCAATCGTGTCGGAAGATTCGAC 54118 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| || || |||||||| ||||||||||| ||||| Sbjct 54119 CTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| |||||||||||||||| || | | || || || ||||| ||||| || Sbjct 53520 TCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATCTTCCAGTTGCTTACCGGCAAAA 53579 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||| ||||| | || | | ||||| || || ||| ||||| ||| Sbjct 53580 ATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTCGACTTGA-CGTT 53638 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||||| ||||| || |||| || ||||| || || |||||||| ||||| Sbjct 53639 GTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAAC 53698 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 53699 AAAGATCTGCAT 53710 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||| | ||||| | ||| || || |||||||||||| ||||||||||| Sbjct 53712 CCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 53771 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | |||| || || ||||| || || || ||||| | ||| ||||| | || Sbjct 53772 AAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAGGA 53831 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | | ||||| ||| ||||| |||| | ||| | | | |||||| ||||| || Sbjct 53832 ATACCTTCCTTATCCTGAATCTTGCTCTTCA-CGTTGTCAATAGTGTCGGAAGATTCAAC 53890 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 53891 CTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||| | ||||| | ||| || || |||||||||||| ||||||||||| Sbjct 54168 CCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 54227 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || | |||| || || ||||| || || || ||||| | ||| || || | || Sbjct 54228 AAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGA 54287 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| || || ||||| | | | || || ||||| || Sbjct 54288 ATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGACT 54347 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || |||||||| || |||| || || ||||| |||||||| Sbjct 54348 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 >seq11 Length=679893 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||||||| | ||| |||| ||| || || ||||||||||| |||||||| ||| Sbjct 629550 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 629609 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | |||| || | ||||| ||||| || ||||| | || ||||| | || Sbjct 629610 AAAGTTCTGCCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGG 629669 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || |||||| ||||| | | | ||||| ||||| || Sbjct 629670 ATACCTTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 629729 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 || | |||||||| || || |||| || ||||| ||| Sbjct 629730 TCTAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 629768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238279886840