Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq9 161 1e-34 seq5 111 2e-19 >seq9 Length=442403 Score = 161 bits (178), Expect = 1e-34 Identities = 780/1226 (64%), Gaps = 32/1226 (3%) Strand=Plus/Plus Query 109916 CATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGT 109975 ||| |||||| || ||| || | ||||| || || |||||||| | |||| | | Sbjct 239443 CATTCCACATGTCAAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTAGAAT 239502 Query 109976 ACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCT 110035 || || || || ||||| || | || || || || | |||||||| || || | Sbjct 239503 ACTTACCTTCCTTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAAATGGTTT 239562 Query 110036 CAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAA 110095 | ||||| || |||| ||| ||||| | || || || |||| | | Sbjct 239563 CGAAAATCTGTTTGTTCAAAGTTTGAGCTTCTTCTGATTCAAAAGGGAGACGCAGCATCA 239622 Query 110096 TAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC 110155 || | ||| || ||||| |||||||| | |||| || | |||| |||| || || Sbjct 239623 TATAGGTATCGGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCCTCATATTTGAAT 239682 Query 110156 GTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCG 110212 || || ||| || || ||| | || ||||||||||| | || | || | | Sbjct 239683 TTCTGGC---TTCAGGAACTGGATAATAATTACGGTCGATGACTCTGTTCAAGTTATGGG 239739 Query 110213 TCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCG-AAC-----GTTTT--CGTCTC 110264 | | || | |||||||| | | ||| ||| ||| ||||| | ||| Sbjct 239740 TAATGACTTTAGCAATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTT 239799 Query 110265 CTTA----TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGT 110320 | | | |||| || ||||| |||||||| || ||||| || || | || || | Sbjct 239800 CAGACATCTCGACAAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCAT 239859 Query 110321 CTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGT 110380 || | | || || | ||||| |||||||||||| |||||| |||||||| Sbjct 239860 CTGGGGAAGAATACTCGACGATTTCACAACACAAGTTGGATGATTTAATGGTACCCAAGT 239919 Query 110381 TCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTT 110440 ||| || || | || ||| ||||| ||||| || | |||| | || ||||| |||| Sbjct 239920 TCTGTTGGTTTGTCTTTCTGTTACATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTT 239979 Query 110441 CCGTCTGTGACTTG-AGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCG 110499 | || |||| |||| | |||||| | ||||| | ||| | ||| ||| | Sbjct 239980 CTGTTTGTG-CTTGTAAAATGGCATACCATAACTTTTGGGCTTTAATGGTT---TTACCA 240035 Query 110500 AGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAA 110559 |||||||| ||||| ||| || | || |||||||| | || | |||||| Sbjct 240036 CGACCTTCCCTTTCGTAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCT 240095 Query 110560 AGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTC 110619 | ||| || |||| | || | | ||| ||| |||| | ||| | ||| Sbjct 240096 AAACCTGGGGCAGCACTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTC 240155 Query 110620 ATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCA 110679 || || |||||||||||||||| || | ||| | || | |||| ||||| | | Sbjct 240156 ATAAAAAGGTCAGGAATCCACAGAGCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTA 240215 Query 110680 CCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAG 110739 || ||| | | | || | |||||| | |||||| | |||||||||||| | | Sbjct 240216 CCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAA 240275 Query 110740 ACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATT 110795 | || | || || || | | || | |||| ||||| || || || || Sbjct 240276 AGGGCAAAGGCACCAGGTCTCTTGTTG-CCTCCTTGGTCCACATAACGAGCAGTATTGTT 240334 Query 110796 GAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACC-CCTAATTCTGG 110854 ||| || | | ||||||||| | |||| || ||| || ||||| | | | | Sbjct 240335 GAAAACACGAATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGA 240394 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 || | ||| ||| |||| || ||||| | ||||| |||||| || ||| ||| Sbjct 240395 ACCT-GTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCA 240453 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 ||||| ||| | | ||| |||||||||| ||||| || || |||| ||||||||| Sbjct 240454 TAGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTA 240513 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | || || |||||||| || || | || || || || || || | || || | || | Sbjct 240514 GGAAACATGAAGACATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGT 240573 Query 111035 GAATGAACAGACCTT-GGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTA 111093 || |||| | | ||| |||||| ||||| || | || | || | ||| || Sbjct 240574 GAGTGAA-ATATCTTAATGACATCAAATTGTAGGTCTTCAGCACAGAATCGATATCACTA 240632 Query 111094 CCGTGAATACCAATGGCAACTCGCAT 111119 ||||| ||||| | || || ||||| Sbjct 240633 CCGTGGATACCTAGCGCCACACGCAT 240658 >seq5 Length=553973 Score = 111 bits (122), Expect = 2e-19 Identities = 764/1222 (63%), Gaps = 28/1222 (2%) Strand=Plus/Minus Query 109918 TCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTAC 109977 ||||||||||| ||||||| ||| | || ||| |||||||| | ||| | ||||| Sbjct 295246 TCCCACATATCGAACTGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTAT 295187 Query 109978 GACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCA 110037 | || || | || | || | ||||| || | | |||||||| || || ||| Sbjct 295186 GGTCCGTCCTTTTGAGCTAGTTCACAAGAAGCTTCCATAGAGGCATGATAAATTGTTTCA 295127 Query 110038 AAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATA 110097 || || || ||| | | || | ||||||| | || ||||| | || | || Sbjct 295126 AAGATTTGGATATTTAGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATG 295067 Query 110098 AACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGT 110157 || || || | ||| |||||||| | | |||| || | ||| |||| || || | | Sbjct 295066 AAAGTGTCAGCCAAACCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTT 295007 Query 110158 CGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACA 110217 | || ||| || ||||| | || || || || || | || | ||| || ||| Sbjct 295006 CTCGCTTCTTCAACAGGGTAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACA 294947 Query 110218 GTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGT-----TTTCGTC-TCCTTATTG 110271 || | ||||| || | ||| | | | | | | || ||| | | |||| || Sbjct 294946 ACTTTGGCAATTTCGTGTAATTTTTTGAAGTTGTATGTAGAAGTTTGGCCGTCCTC--TG 294889 Query 110272 ACATATT--TG------GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTT 110323 || | | || || | |||| ||| || | || || |||| ||| ||||| Sbjct 294888 ACGTTTCAATGAACGCTGGCAAGGCAACAGAAGCCAAGTTACAAACAGCAGTTTCGTCCG 294829 Query 110324 TGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCT 110383 | | ||| || | |||||| || ||||| || ||| |||||||| ||||| | Sbjct 294828 GAGCTGAGTACTCAACAATTTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTT 294769 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 | || || || || |||||| ||||| ||||| | | | || ||||| ||||| | Sbjct 294768 TTTGGTTAGACTTTCTGTTGCAAGCATCTTTATAAACGACAAAAGGTGTACCCGTTTCAG 294709 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGAC 110503 | |||| | | ||||| | ||||| | || | || ||| | ||| Sbjct 294708 TTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCCTTAATGGTC---TTACCACGAC 294652 Query 110504 CTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACA-TCAGAAAGA 110562 |||| | ||||| ||| || | | ||||| || | ||||| ||| || ||| Sbjct 294651 CTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAACTCGTCGCCGTA-ACAGTCGCTTAGA 294593 Query 110563 CCCTTCGCCT-TGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCAT 110621 || || ||| || | |||| | | |||| | ||| ||| || || | |||||| Sbjct 294592 CCAGGAGCGGCTGTTGG-AGAGAACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCAT 294534 Query 110622 GAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACC 110681 ||| || || |||||||| | || | || | || | |||| ||||| | ||| Sbjct 294533 GAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACC 294474 Query 110682 TTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGAC 110741 ||||| | | || | ||| || | ||||| | ||||||||||| || || | Sbjct 294473 GTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGTACAG 294414 Query 110742 AGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGA 110797 || | || || ||| | ||| |||||| ||||| || || ||| ||| | Sbjct 294413 GGCAAAGGCGCCAGGTCTTTTGTT-ACCACCCTGGTCGACATAACGGGCGGTGTTATTAA 294355 Query 110798 AGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACT 110857 | || | | ||| ||||| | || | || ||| |||||||| ||| || Sbjct 294354 AAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAAC 294295 Query 110858 TATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTG 110917 | | | |||||| | |||||||| | |||||||||||| || || ||| | Sbjct 294294 CAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAG 294235 Query 110918 CACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAA 110977 |||| ||| | | || | |||||||| || || || || |||| |||| | | | Sbjct 294234 CACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGA 294175 Query 110978 AGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAA 111037 | ||||| ||||| ||||| || || || ||||| || | || || | |||||| Sbjct 294174 AACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAG 294115 Query 111038 TGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGT 111097 | || | | ||||| ||| ||||| || || || | | ||| |||||| Sbjct 294114 TAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTCGATGTCTCTACCGT 294055 Query 111098 GAATACCAATGGCAACTCGCAT 111119 | || || | || |||| ||| Sbjct 294054 GGATGCCCAGTGCGACTCTCAT 294033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975874842600