Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq12 170 4e-37 seq9 158 3e-33 seq11 145 2e-29 >seq12 Length=1026045 Score = 170 bits (188), Expect = 4e-37 Identities = 173/223 (78%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| || || | || | ||||||||| ||||| || ||||| |||| |||| | Sbjct 54173 TCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 54231 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| || ||||| | || ||||| ||||||||||| | Sbjct 54232 TTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATAC 54291 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||||||||| ||||||||| ||||||||| ||||| || || ||| ||| ||||| | Sbjct 54292 CTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCGACTTCCA 54351 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || |||||||| || || || | |||||| Sbjct 54352 ATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 || || || ||||| |||||||| || |||||||||||||| |||| | ||||| ||| Sbjct 53496 CTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCA 53555 Query 194986 TCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||||| || |||||||| || || || | | ||||||||||||||||| ||||| || Sbjct 53556 TCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTA 53615 Query 195046 TCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACC 195105 ||||||||||| ||||||||| ||||| ||||| ||| ||| || || || |||| Sbjct 53616 TCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATG 53675 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || |||| || || || || | ||||| Sbjct 53676 GTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 53710 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | |||||| || | ||| ||||| || || |||||||||||||| |||| | || Sbjct 53945 TCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGATAACGT 54004 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| || |||||||| || || || | | ||||||||||||||||| || Sbjct 54005 TCTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACC 54064 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||||||||| ||||||||| ||||| ||||| ||| ||| || || || Sbjct 54065 TTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAG 54124 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||| || || || || | ||||| Sbjct 54125 AGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 156 bits (172), Expect = 9e-33 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| ||||| || || | || | ||||||||| ||||| || ||||| |||| |||| | Sbjct 53717 TCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-G 53775 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| || |||||||| || ||||| | || ||||||||||||||||| | Sbjct 53776 TTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAGGAATAC 53835 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| || || ||||| || ||| ||||| ||||| ||||| ||| ||| || || | Sbjct 53836 CTTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTCAACCTCTA 53895 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| | || || || || | |||||| || || | |||||| Sbjct 53896 GGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 >seq9 Length=442403 Score = 158 bits (174), Expect = 3e-33 Identities = 165/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAG 194977 ||| | |||||| || | ||| | |||||| ||||||||||| ||||| || | |||| | Sbjct 64035 TCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAG-G 63977 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 |||| || ||||| | |||||||| || ||||| | || ||||||||| || || || | Sbjct 63976 TTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATAC 63917 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAA 195097 |||| ||||||||||| ||| |||||| || ||||| ||||| ||| ||| ||||| | Sbjct 63916 CTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCA 63857 Query 195098 GGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | ||||| || |||||||| || || || Sbjct 63856 AAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 63823 >seq11 Length=679893 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||||||||| | || | |||||| || ||||| || ||||| || | | ||| Sbjct 629555 TCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGT 629614 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| || ||||| | |||||||| || ||||| | || ||||||||| || || || || Sbjct 629615 TCTGCCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACC 629674 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || |||||| || ||||||||||| ||| ||| ||||| | Sbjct 629675 TTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAA 629734 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || | ||||| || |||||||| || ||||| Sbjct 629735 AGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 629767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481358341039