Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03-
21] 17 sequences; 11,881,637 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq9 226 3e-54
seq10 224 1e-53
seq5 156 5e-33
>seq9
Length=442403
Score = 226 bits (250), Expect = 3e-54
Identities = 554/839 (66%), Gaps = 3/839 (0%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || ||||| ||||||||||| || || |||| ||| || ||| | | |||
Sbjct 239823 AGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATT 239882
Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996
||| ||| | || |||| || |||||||| || || || || | |||||
Sbjct 239883 TCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTA 239942
Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056
|||||||||||||||| ||| |||||||| || |||||| | || | || | || |
Sbjct 239943 CATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCA 240002
Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116
| ||| | | | | | ||||| | | | || | | || |||||| |||
Sbjct 240003 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 240059
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
|||| || ||||||||||| || | |||| |||||| || || || | ||| |
Sbjct 240060 TATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 240119
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
| || | ||| | |||| | || || | ||||||| | || || ||||| |||
Sbjct 240120 AATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 240179
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| ||||||||||| | | | |||||| || ||| | || ||| || | |
Sbjct 240180 GCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 240239
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356
||||| | ||||| || ||||||||||| || | | || | |||| |||| ||
Sbjct 240240 AAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTG 240299
Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416
|| |||||||| || | ||| | ||||||||||| |||| | | ||| || | |
Sbjct 240300 TTGCCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 240359
Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476
|||||||| |||| ||||| || | |||||| || | | | || || ||||
Sbjct 240360 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 240419
Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536
|| ||| | ||||||||| | || || || | |||||| ||| | |||||||||
Sbjct 240420 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 240479
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| ||||| ||| ||||| |||| | ||| ||||| ||||||||| || ||
Sbjct 240480 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 240539
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
||| || | |||||||| ||||| || || ||| | || || | ||| | |||
Sbjct 240540 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAA 240599
Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715
|| || || | | |||||||| ||||| | || ||||||| | ||||||||
Sbjct 240600 TTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCAT 240658
>seq10
Length=729272
Score = 224 bits (248), Expect = 1e-53
Identities = 601/912 (66%), Gaps = 9/912 (1%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | ||||| ||||||||||| || || || || | || || || |
Sbjct 390621 TTTTGGTAATCAGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 390562
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| || || || |||| || || || ||| ||| || || | | |
Sbjct 390561 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAGGCGACCAAA 390502
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || || | || ||| |||||| | ||| ||||| |||| ||
Sbjct 390501 AGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 390442
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907
||| || | ||||| ||||| | |||| |||| || | || ||||| | | ||
Sbjct 390441 GCAACTGGCAAGGCATCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 390384
Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967
| | |||| | || | || || | ||| |||| ||| |||||||
Sbjct 390383 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 390324
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| || || | || |||||||| | |||||||| ||||| || || ||||| ||||
Sbjct 390323 AGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCA 390264
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
||| ||||| || || |||||||| || || || || || || || ||||| | |||||
Sbjct 390263 TCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACACCTT 390204
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146
| | | ||||| || ||||||||||| ||| ||| | || ||| | |||||||||
Sbjct 390203 CGATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 390145
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
| || ||||| || ||||||| | ||| || || | || | ||| || | |
Sbjct 390144 CTTAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAA 390085
Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266
| || || | | || |||| || | ||| ||||| || ||| |||| |||
Sbjct 390084 AATTCACTTTCCTTAGGGTCCTTAATGTAGGTATCGATCAACAAGGAGTAGGTTTCAGAA 390025
Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326
||||||||||| || || || || || || |||| |||| |||| | || |||
Sbjct 390024 TGAATATTTTCAATCATGATTTGGAAACCATAGAAACTCTTTGCCTCTGGAACTTGAACT 389965
Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386
|| | | || |||| ||||| ||||||||||| || || ||| ||| || |||||
Sbjct 389964 TCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAG 389905
Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443
|| | || ||||||| | | || | | | | | | | |||||||||| |
Sbjct 389904 GCAAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTGTTCCAATCATGA 389845
Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503
||||| ||||| ||||| | ||||||| | ||||| ||||| || || || |||||
Sbjct 389844 ATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGATGCTTCGGCACGCTTATAA 389785
Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563
| ||| || ||| | || | ||||| || | |||| ||| | || | || ||
Sbjct 389784 GCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTC 389725
Query 19564 AGAATAGGTTCC 19575
| | |||||||
Sbjct 389724 AACAAAGGTTCC 389713
>seq5
Length=553973
Score = 156 bits (172), Expect = 5e-33
Identities = 565/875 (65%), Gaps = 33/875 (4%)
Strand=Plus/Minus
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
|||| || | ||| || ||||| ||||| ||| ||||| || | | | |||||| |
Sbjct 294537 TCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTT 294478
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || ||| || | | |||| ||| || | |||||||||||||||||||| | |
Sbjct 294477 TACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGT 294418
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
| | || | | || |||| ||| ||||| || || || | ||| | ||| || || |
Sbjct 294417 ACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACGGGCGGTGTTAT 294358
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450
|| |||| | | ||| || | | || || || |||| || || || | ||| |||
Sbjct 294357 TAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAG 294298
Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510
||| | | | |||||| || | ||| |||||||| || |||| || || |
Sbjct 294297 AACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 294238
Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570
|||||| ||| | || || ||||| || || ||| || || |||| | |
Sbjct 294237 AAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCA 294178
Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630
|||||| |||||||| || | ||| || | |||||| || |||||||| ||||
Sbjct 294177 AGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCAT 294118
Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690
|| |||| |||| || | || ||||||||||| | | | | || || || |
Sbjct 294117 GAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTCGATGTCTCTAC 294058
Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750
|| || || | | || | ||| | | | ||| || | ||| | | || |
Sbjct 294057 CGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGCCACTTGACCGT 293998
Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAAAG 48809
| ||| | | | ||| || |||||| |||||||||||||| || |||| || |||
Sbjct 293997 TGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAGTAACTGTACTGGAAA- 293939
Query 48810 TCGTTATCATTAATAATT-----GATGAATTTATTC----TTTCCTT----ATGTTTATA 48856
|| | |||| | |||| | | ||||||| | ||||| | ||| || ||
Sbjct 293938 TCTCTGTCATAGACAATTGCAGAGTTCAATTTATCCCTGTTTTCCATGACAATG-TTGTA 293880
Query 48857 TACTACATC------CATTACA-----TTTTTTGATATAA---TTGA-TTCCTTGTAAAG 48901
|| | || ||| | || || | |||| | | |||||
Sbjct 293879 GACATCGTCAGAAATCATGGGAGCGGGCTTACCAGTAGCAGCGTTGACGTATCTATAAAG 293820
Query 48902 ATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATAT 48961
|||||| ||||| | | |||| |||| | |||| |||||| | |||||| || | ||
Sbjct 293819 ATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAATTAGAAATGGCGAT 293760
Query 48962 TCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTAC-TAGATATTTCTG 49020
||||||||||| |||| ||||||||||||| || || ||||||| | || ||||||
Sbjct 293759 CCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGTACGCACATGTTTCTG 293701
Query 49021 CTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055
| ||||| | |||| ||| | || || ||||||
Sbjct 293700 CGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 293666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108680551880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |