Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 226 3e-54 seq10 224 1e-53 seq5 156 5e-33 >seq9 Length=442403 Score = 226 bits (250), Expect = 3e-54 Identities = 554/839 (66%), Gaps = 3/839 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| ||||||||||| || || |||| ||| || ||| | | ||| Sbjct 239823 AGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATACTCGACGATT 239882 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | || |||| || |||||||| || || || || | ||||| Sbjct 239883 TCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTGTTA 239942 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 |||||||||||||||| ||| |||||||| || |||||| | || | || | || | Sbjct 239943 CATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATGGCA 240002 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| ||| Sbjct 240003 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 240059 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || ||||||||||| || | |||| |||||| || || || | ||| | Sbjct 240060 TATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 240119 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | ||| | |||| | || || | ||||||| | || || ||||| ||| Sbjct 240120 AATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 240179 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||||| | | | |||||| || ||| | || ||| || | | Sbjct 240180 GCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 240239 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| || ||||||||||| || | | || | |||| |||| || Sbjct 240240 AAGTCGAAGATATCTGCGTGCCATGGTTCCAAGAAAAGGGCAAAGGCACCAGGTCTCTTG 240299 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||| || | ||| | ||||||||||| |||| | | ||| || | | Sbjct 240300 TTGCCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 240359 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 |||||||| |||| ||||| || | |||||| || | | | || || |||| Sbjct 240360 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 240419 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| | || || || | |||||| ||| | ||||||||| Sbjct 240420 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 240479 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | ||| ||||| ||||||||| || || Sbjct 240480 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 240539 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | |||||||| ||||| || || ||| | || || | ||| | ||| Sbjct 240540 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAATGACATCAAA 240599 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 || || || | | |||||||| ||||| | || ||||||| | |||||||| Sbjct 240600 TTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTAGCGCCACACGCAT 240658 >seq10 Length=729272 Score = 224 bits (248), Expect = 1e-53 Identities = 601/912 (66%), Gaps = 9/912 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||| ||||||||||| || || || || | || || || | Sbjct 390621 TTTTGGTAATCAGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 390562 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || || || |||| || || || ||| ||| || || | | | Sbjct 390561 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAGGCGACCAAA 390502 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 390501 AGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 390442 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| || | ||||| ||||| | |||| |||| || | || ||||| | | || Sbjct 390441 GCAACTGGCAAGGCATCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 390384 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 390383 TTTTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 390324 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||| | |||||||| ||||| || || ||||| |||| Sbjct 390323 AGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCA 390264 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| || || |||||||| || || || || || || || ||||| | ||||| Sbjct 390263 TCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACACCTT 390204 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| || ||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 390203 CGATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 390145 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 390144 CTTAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAA 390085 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | || || | | || |||| || | ||| ||||| || ||| |||| ||| Sbjct 390084 AATTCACTTTCCTTAGGGTCCTTAATGTAGGTATCGATCAACAAGGAGTAGGTTTCAGAA 390025 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||||||||| || || || || || || |||| |||| |||| | || ||| Sbjct 390024 TGAATATTTTCAATCATGATTTGGAAACCATAGAAACTCTTTGCCTCTGGAACTTGAACT 389965 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | | || |||| ||||| ||||||||||| || || ||| ||| || ||||| Sbjct 389964 TCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAG 389905 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443 || | || ||||||| | | || | | | | | | | |||||||||| | Sbjct 389904 GCAAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTGTTCCAATCATGA 389845 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||||| ||||| ||||| | ||||||| | ||||| ||||| || || || ||||| Sbjct 389844 ATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGATGCTTCGGCACGCTTATAA 389785 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 | ||| || ||| | || | ||||| || | |||| ||| | || | || || Sbjct 389784 GCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTC 389725 Query 19564 AGAATAGGTTCC 19575 | | ||||||| Sbjct 389724 AACAAAGGTTCC 389713 >seq5 Length=553973 Score = 156 bits (172), Expect = 5e-33 Identities = 565/875 (65%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | ||| || ||||| ||||| ||| ||||| || | | | |||||| | Sbjct 294537 TCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTT 294478 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || ||| || | | |||| ||| || | |||||||||||||||||||| | | Sbjct 294477 TACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGT 294418 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | || | | || |||| ||| ||||| || || || | ||| | ||| || || | Sbjct 294417 ACAGGGCAAAGGCGCCAGGTCTTTTGTTACCACCCTGGTCGACATAACGGGCGGTGTTAT 294358 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 || |||| | | ||| || | | || || || |||| || || || | ||| ||| Sbjct 294357 TAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAG 294298 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| | | | |||||| || | ||| |||||||| || |||| || || | Sbjct 294297 AACCAGTTGAACGAATATTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 294238 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| ||| | || || ||||| || || ||| || || |||| | | Sbjct 294237 AAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCA 294178 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 |||||| |||||||| || | ||| || | |||||| || |||||||| |||| Sbjct 294177 AGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCAT 294118 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 || |||| |||| || | || ||||||||||| | | | | || || || | Sbjct 294117 GAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCCGCCTCGATGTCTCTAC 294058 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 || || || | | || | ||| | | | ||| || | ||| | | || | Sbjct 294057 CGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGCCACTTGACCGT 293998 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAAAG 48809 | ||| | | | ||| || |||||| |||||||||||||| || |||| || ||| Sbjct 293997 TGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAGTAACTGTACTGGAAA- 293939 Query 48810 TCGTTATCATTAATAATT-----GATGAATTTATTC----TTTCCTT----ATGTTTATA 48856 || | |||| | |||| | | ||||||| | ||||| | ||| || || Sbjct 293938 TCTCTGTCATAGACAATTGCAGAGTTCAATTTATCCCTGTTTTCCATGACAATG-TTGTA 293880 Query 48857 TACTACATC------CATTACA-----TTTTTTGATATAA---TTGA-TTCCTTGTAAAG 48901 || | || ||| | || || | |||| | | ||||| Sbjct 293879 GACATCGTCAGAAATCATGGGAGCGGGCTTACCAGTAGCAGCGTTGACGTATCTATAAAG 293820 Query 48902 ATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATAT 48961 |||||| ||||| | | |||| |||| | |||| |||||| | |||||| || | || Sbjct 293819 ATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAATTAGAAATGGCGAT 293760 Query 48962 TCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTAC-TAGATATTTCTG 49020 ||||||||||| |||| ||||||||||||| || || ||||||| | || |||||| Sbjct 293759 CCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGTACGCACATGTTTCTG 293701 Query 49021 CTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055 | ||||| | |||| ||| | || || |||||| Sbjct 293700 CGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 293666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880