Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 331 1e-85 seq9 232 8e-56 seq2 84.2 3e-11 >seq5 Length=553973 Score = 331 bits (366), Expect = 1e-85 Identities = 902/1368 (66%), Gaps = 36/1368 (3%) Strand=Plus/Plus Query 75227 ATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGAC 75286 ||| | |||||| | ||||||||||| |||||| || | | | || ||||| || Sbjct 294033 ATGAGAGTCGCACTGGGCATCCACGGTAGAGACATCGAGGCGGCTCTAGAAACATATAAC 294092 Query 75287 AAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACC 75345 ||||| | || || || | ||| || | ||||| | || ||||||||||| || Sbjct 294093 TTAATGTCTCTAAAATACTTT-ACTCATGCCTCTCCAACTTTGTTTAATGCTGGTACTCC 294151 Query 75346 AAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTAT 75405 || ||| || |||||| ||| ||| | |||||| ||||||||||| ||| | ||||| Sbjct 294152 AAAACCTCAAATGTCCTCTTGTTTCTTGGTCGCCATGAAGGAGGACTCTATCGAGGGTAT 294211 Query 75406 CTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCA 75465 || | ||| | | || ||||| || || || ||||| |||||||| | || Sbjct 294212 TTACGACACTTTGAAAGAATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACA 294271 Query 75466 CATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGG 75525 |||||| || | | | | | ||| ||| || ||||| ||| || | || Sbjct 294272 TATCCATAATATTCGTTCAACTGGTTCTTACATTGCTGGTACAAACGGTACCTCTAACGG 294331 Query 75526 TATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG 75585 | ||||| ||| |||| || ||||| ||| || || ||||| | || | | || Sbjct 294332 GTTAATTCCCATGATTCGTGTTTTTAATAACACCGCCCGTTATGTCGACCAGG-GTGGTA 294390 Query 75586 TCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGT 75641 | ||| || || | || | ||| |||||||||||||||| ||||| | || | Sbjct 294391 ACAAAAGACCTGGCGCCTTTGCCCTGTACCTGGAACCATGGCATGCTGATATTTTTGATT 294450 Query 75642 TCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCAT 75701 | |||| | || ||||| ||| | ||||| ||| |||||| | ||| | Sbjct 294451 TTATTGATATCAGAAAGAACCACGGTAAAGAAGAAATTCGTGCAAGAGATTTGTTTCCTG 294510 Query 75702 CCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTT 75761 | || |||||||| || |||||||||||||| || || ||| ||| ||| || | | Sbjct 294511 CTCTATGGATTCCCGATCTTTTCATGAAGCGTGTCGAAGAGAATGGGACTTGGACTTTGT 294570 Query 75762 TCTGTCCAGACAAG-GCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTC 75820 ||| |||| ||| || || ||||| |||| || || ||||||||||| || Sbjct 294571 TCTCTCCA-ACAGCCGCTCCTGGTCTAAGCGACTGTTACGGCGACGAGTTTGAAGCTCTA 294629 Query 75821 TACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TG 75879 || || || ||| | || ||| | | || | | | || | | | || || Sbjct 294630 TATACCCGCTACGAAAAAGAAGGTCGTGGTAAGACCATTA----AGGCTCAAAAATTATG 294685 Query 75880 GAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGC 75939 | | | ||| | || |||| || || || || ||||| | | | |||| || ||||| Sbjct 294686 GTATTCCATTTTGGAAGCACAAACTGAAACGGGTACACCTTTTGTCGTTTATAAAGATGC 294745 Query 75940 TTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCAC 75999 ||| |||| ||| ||||||||| || || || |||||| ||||| | ||| Sbjct 294746 TTGCAACAGAAAGTCTAACCAAAAAAACTTAGGTGTCATCAAGTCATCAAACTTATGCTG 294805 Query 76000 GGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGC 76059 |||||| | |||||| ||| | ||| || || |||||||| || ||||| || | || Sbjct 294806 TGAAATTGTTGAGTACTCAGCTCCGGACGAAACTGCTGTTTGTAACTTGGCTTCTGTTGC 294865 Query 76060 CCTTCCAAAGTATGTCAATGAA------GAGACTCGC---ACTTTTGATTA-----TGAA 76105 | | ||| || ||| |||| ||| || |||| | || | || Sbjct 294866 CTTGCCAGCGT---TCATTGAAACGTCAGAGGACGGCCAAACTTCTACATACAACTTCAA 294922 Query 76106 AAACTT-CATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAA 76164 ||| || || ||||| | || ||||||| ||| ||||| |||| ||||| | || Sbjct 294923 AAAATTACACGAAATTGCCAAAGTTGTTACTCGTAATTTAAACAGAGTTATTGATCGTAA 294982 Query 76165 TTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGG 76224 || || || ||||| ||| ||| || |||||| |||| ||||| |||| |||||| Sbjct 294983 TTACTACCCTGTTGAAGAAGCGAGAAGATCCAATATGAGACATAGACCAATTGCTTTGGG 295042 Query 76225 TGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGC 76284 |||||||||| | || || || || ||| || | | |||||||| || || || Sbjct 295043 TGTTCAAGGTTTGGCTGACACTTTCATGTTGCTACGTTTACCCTTTGATTCTGAAGAGGC 295102 Query 76285 CAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTG 76344 | | ||| | ||||||||||| || ||||| || || |||| || ||| Sbjct 295103 CCGTTTACTAAATATCCAAATCTTTGAAACAATTTATCATGCCTCTATGGAAGCTTCTTG 295162 Query 76345 TGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGG 76404 |||| | ||| || | || | || || || || | |||||||| || || ||||| Sbjct 295163 TGAACTAGCTCAAAAGGACGGACCATACGAAACCTTCCAAGGTTCTCCAGCTTCTCAAGG 295222 Query 76405 GGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACGACTGGGATGTTCT 76464 | |||||||| ||||||||||| || || | || | || |||||| | | Sbjct 295223 TATACTTCAGTTCGATATGTGGGACCAAAAACCCTACGGCATGTGGGATTGGGATACTTT 295282 Query 76465 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCA 76522 | | || ||| | || | ||| || | ||| ||||| |||||||||||||| Sbjct 295283 GAGGAAAGATGTCATGAAGCATGGTATTAGAAAC--TCTTTGACCATGGCACCAATGCCT 295340 Query 76523 ACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCA 76570 || || ||||| | ||||| |||||| |||||||||| ||||||||| Sbjct 295341 ACTGCATCCACATCCCAAATATTGGGTTATAATGAATGTTTTGAACCA 295388 >seq9 Length=442403 Score = 232 bits (256), Expect = 8e-56 Identities = 912/1407 (65%), Gaps = 48/1407 (3%) Strand=Plus/Minus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 |||||| || || | ||||| || || | || |||||||| || || |||||||| Sbjct 240673 CCACAGCACTTGGTTATGCGTGTGGCGCTAGGTATCCACGGTAGTGATATCGATTCTGTG 240614 Query 75272 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 || |||| ||| | |||||| ||| ||| |||| |||||| | |||||| | || Sbjct 240613 CTGAAGACCTACAATTTGATGTCATTAAGATAT-TTCACTCACGCTTCCCCAACCTTATT 240555 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 || |||||||| ||| || || ||||| || ||||| || |||| ||||| || Sbjct 240554 TAACGCTGGTACTCCACACCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAAGGATGA 240495 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| || | ||||| |||| ||| | | || ||||| || || ||| || || Sbjct 240494 CTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGACTGCAGG 240435 Query 75451 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 75510 ||| |||| | || || | | | | ||| ||| ||| || || || Sbjct 240434 TGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGGTACCAA 240375 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 ||| ||| |||| | ||||| ||| |||| || || ||| || || || ||||| Sbjct 240374 CGGTACTTCAAATGGGTTGATTCCTATGATTCGTGTTTTCAACAATACTGCTCGTTATGT 240315 Query 75571 AAATCAAGCGGGGCGTCGCAAGG---GGT-CCATCGCGGTCTACTTGGAACCATGGCATG 75626 | |||| | ||| | || ||| || | || | | ||||||||||||||| | Sbjct 240314 GGACCAAG-GAGGCAACAAGAGACCTGGTGCCTTTGCCCTTTTCTTGGAACCATGGCACG 240256 Query 75627 CCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTA 75686 | |||||| | || || | || | || | ||| ||| | ||||| ||| | Sbjct 240255 CAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGGTAAAGAAGAAATTCGTGCAA 240196 Query 75687 GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTG 75746 | ||| | || | | ||||||||||| |||||||| ||||| || ||| | |||| || Sbjct 240195 GGGATTTATTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCAAGAGGATG 240136 Query 75747 GTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGG 75806 | | ||| || | || | ||| || |||||| | || | |||||| | Sbjct 240135 GGCCCTGGACTTTATTTTCTCCCAGTGCTGCCCCAGGTTTAGATGATGTCTGGGGTGATG 240076 Query 75807 AGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAG 75866 | ||||||| || || || || ||| ||| ||| | | || | | | | | Sbjct 240075 AATTTGAAGAGCTATATACCCGTTACGAAAGGGAAGGTCGTGGTAAAACCATTAAA---G 240019 Query 75867 CCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATG 75925 || | | ||| ||| | || ||| | || |||| || || || || ||||| | ||| Sbjct 240018 CC-CAAAAGTTATGGTATGCCATTTTACAAGCACAAACAGAAACAGGTACACCTTTCATG 239960 Query 75926 CTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGC 75985 |||||||||| || ||||||| |||| |||||| |||| ||||| || || || Sbjct 239959 GTTTACAAGGACGCATGTAACAGAAAGACAAACCAACAGAACTTGGGTACCATTAAATCA 239900 Query 75986 TCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAAT 76045 || || | || ||||| | ||||| | ||||| || || ||||| ||| Sbjct 239899 TCCAACTTGTGTTGTGAAATCGTCGAGTATTCTTCCCCAGATGAAACCGCCGTTTGTAAT 239840 Query 76046 TTGGCATCAATCGCCCTTCCAAAGTATGTCAA------TGAAGAG------ACTCGCACT 76093 | || || || ||||| ||| | |||| | |||||| ||| | | Sbjct 239839 CTAGCCTCTATTGCCCTCCCAGCATTTGTCGAGATGTCTGAAGATGGTAAAACTGCAAGT 239780 Query 76094 TTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTC 76153 | | ||| || | | |||||||| | || | ||||| | || | ||| ||||| Sbjct 239779 TATAATTTCGAGAGTTTACATGAAATTGCTAAAGTCATTACCCATAACTTGAACAGAGTC 239720 Query 76154 ATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 || ||| | |||| |||||| ||| || |||| || |||||| | || |||||| Sbjct 239719 ATCGACCGTAATTATTATCCAGTTCCTGAAGCCAGAAATTCAAATATGAGGCATAGACCT 239660 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG-TGCCGCTACGCATTTGA 76272 |||| ||||||||||||||||| || ||| | ||| || ||| || | | ||||| Sbjct 239659 ATTGCCTTGGGTGTTCAAGGTCTGGCCGATACCTATATGATGCTGCGTCT-CCCTTTTGA 239601 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||||| ||||| | |||| | || || |||||||| ||||| || | || Sbjct 239600 ATCAGAAGAAGCTCAAACTTTGAACAAACAGATTTTCGAAACCATTTATCATGCTACTCT 239541 Query 76333 GGAGGCGAGTTGTGAATTGG--CTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCT 76390 || || |||||||||| | |||| ||||| ||| || || || |||||| Sbjct 239540 TGAAGCCTCCTGTGAATTGGCACAGAAG--GAAGGTAAGTATTCTACTTTCGAAGGTTCT 239483 Query 76391 CCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA--AGCTCAACT 76448 || || || | || | || || ||||| |||| |||| | || ||| | | | | Sbjct 239482 CCAGCCTCTAAGGGTATTCTACAATTTGACATGT-GGAATGCTAAGCCATTTGGT-ATGT 239425 Query 76449 ACGACTGGGATGTTCTCAAGGAACG-CA---TCAAGGAGAAGGGTCTTCGTAACAGTCTT 76504 || ||||| || ||| || | || |||| | | || | | | ||| |||| Sbjct 239424 GGGATTGGGA-AACCTTAAGAAAGGACATTGTCAA--ACATGGAT-TAAGAAAC--TCTT 239371 Query 76505 T--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGAATGC 76561 | ||||| ||||||||||| ||||| || | |||| |||||| | |||| ||||| Sbjct 239370 TGACAATGGCGCCAATGCCAACTGCCTCAACTTCTCAAATTCTTGGAT-ATAACGAATGT 239312 Query 76562 TTTGAACCATACACAACAAACATCTAC 76588 || |||||| || ||||||| ||| Sbjct 239311 TTCGAACCAGTGACTTCAAACATGTAC 239285 >seq2 Length=800085 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27873 TTGTGCGATGCGATCCCCTTTCTTTACCTCAAAGTCTTTGTCTCCGTGATTGAAGAGAAC 27932 ||| || | |||||| ||||| || | | || ||| | | | ||||||||| | || Sbjct 713295 TTGGGCTACGCGATCACCTTTTTTGATGGCGAAATCTCTCTGTGAGTGATTGAATAAGAC 713236 Query 27933 GACTTTGACTTCACCTGTATAGTCGGGATCAATAACACCCGCACCAACTTGAATACCATG 27992 ||||| |||||||| || || || || | |||||| ||||| ||||||||||| Sbjct 713235 TACTTTAACTTCACCAGTGTAATCTCTGTCGACAACACCAGCACCGGTTTGAATACCATT 713176 Query 27993 CTTCACAGCGAGACCGGATCGTGGTGCAACACGACCATA 28031 ||||| || || || |||| ||| |||| ||||| || Sbjct 713175 TTTCACTGCTAGGCCTGATCTTGGCGCAATGCGACCGTA 713137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569473228960