Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12 158 2e-33 seq11 156 8e-33 seq9 150 3e-31 seq10 89.7 9e-13 >seq12 Length=1026045 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||||||||| | ||| || || || || || Sbjct 53709 ATACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCG 53768 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| |||| ||| ||||||||||| || |||||||||||||| || Sbjct 53769 GACAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGA 53828 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || | || || || ||||| || || ||||| Sbjct 53829 GGAATACCTTCCTTATCCTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTCA 53888 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || ||||||||||||| ||||| | || || ||||| Sbjct 53889 ACCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 53938 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| ||| |||||||||||||| | ||| || || || || || Sbjct 54165 ATACCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCG 54224 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| |||| ||| ||||||||||| || ||||||||||| || || Sbjct 54225 GACAAGGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAGATCAATCTCTGTTGATCTGGA 54284 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || ||||| || || ||| |||||||| || ||||| Sbjct 54285 GGAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATAGTATCAGAAGATTCG 54344 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || || || || | || || ||||| Sbjct 54345 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || || ||||||| || || || || Sbjct 469447 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTG 469388 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || | || || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 469387 TAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 469328 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 469327 TCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAA 469268 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| |||||||| ||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 469267 GATTCAACTTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 469209 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || || || | ||||| || || |||||| || || Sbjct 53937 ATACCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCG 53996 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | ||| ||||| |||||||| || ||||||||||| || Sbjct 53997 GATAACGTTCTGCCATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGA 54056 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| ||||| || || || || || || || ||||| Sbjct 54057 GGAATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCG 54116 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||||||||| |||||||| | || |||| || |||||||| Sbjct 54117 ACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 54166 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| || | | ||| || | || | ||| | || || |||||| || || | Sbjct 53482 TACCACCCCTCAACCTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGG 53541 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 |||| | || | || |||| ||| ||||| |||||||| || ||||||||||| || | Sbjct 53542 ATAACGTTCTGCCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAG 53601 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || ||||| |||||||| ||||| || || || || || || || ||||| | Sbjct 53602 GAATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGA 53661 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || ||||||||||| |||||||| | || |||| || |||||||| Sbjct 53662 CCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 53710 >seq11 Length=679893 Score = 156 bits (172), Expect = 8e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || ||||||||||| | || || || || || Sbjct 629544 ATGATACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 629603 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || |||| |||||||| ||||| ||||| || ||||| ||||||||| Sbjct 629604 TCAGATAAAGTTCTGCCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCA 629663 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| |||||||| || || || ||||| || || || || ||| Sbjct 629664 GGTGGGATACCTTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGAT 629723 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||||| ||| ||||| |||||||| || || |||| ||| Sbjct 629724 TCAACTTCTAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 629767 >seq9 Length=442403 Score = 150 bits (166), Expect = 3e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || ||||| |||||||| | ||||| ||| || || Sbjct 64046 ATGATACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAG 63987 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 63986 TCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 63927 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 63926 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 63867 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| | ||| ||||| |||||||| || || || Sbjct 63866 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTT 63829 >seq10 Length=729272 Score = 89.7 bits (98), Expect = 9e-13 Identities = 328/505 (65%), Gaps = 13/505 (3%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||| ||| | ||||| || ||||| || || || | || || || Sbjct 390621 TTTTGGTAATCAGAGACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 390562 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATC-AATACATATAA 38950 | |||||| || || || |||| | || || ||||| | | || | || | || Sbjct 390561 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCT-TGTTACCGAAGGCGACCAA 390503 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | ||| || || || || ||||| ||||| ||||| ||| |||||||| | || Sbjct 390502 AAGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAA 390443 Query 39011 TTTAAATGGTAATGCATCATCAATAAAT-TCttt-ttctatttctacagcttgtttaatt 39068 || ||| || ||||| ||| || | ||||| ||| ||||| ||||| | | | Sbjct 390442 GGCAACTGGCAAGGCATC--CAAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACA 390385 Query 39069 atcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAAC 39126 || | || | || | | | ||| | || | ||| || | | || | Sbjct 390384 ATTTT--TTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGG---GCGAACAACAAGC 390330 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||||| || || || ||||||||||| || | || ||||| ||| || || || | Sbjct 390329 ATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAAC 390270 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| | |||||||| || | ||| || || || || || || || ||||| | Sbjct 390269 CGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGA 390210 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 ||| || | | | ||||| || | || |||| | ||||||| | | | ||| || Sbjct 390209 CACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGAA 390150 Query 39307 TCCAATTTATGGCCCAATCTGCTTT 39331 |||| ||| ||||| || || || Sbjct 390149 TCCATCTTAGAGCCCACTCGGCCTT 390125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135807658600