Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 158 4e-33 seq5 147 6e-30 seq13 113 1e-19 seq4 104 7e-17 seq15 87.8 5e-12 >seq9 Length=442403 Score = 158 bits (174), Expect = 4e-33 Identities = 223/311 (72%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 ||||| || || || ||||| |||||||| || ||||| |||| | ||||||||| | Sbjct 240300 TTGCCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 240359 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||||| || ||||| ||| |||| ||||| | || || | || | |||| Sbjct 240360 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 240419 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| || ||||| ||| ||||| || | ||||| || Sbjct 240420 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 240479 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 |||||||||||||| ||||| | ||| | | ||| | || ||| | ||| || || Sbjct 240480 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGGTGT 240539 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTATTAGACATATA 156358 || || |||||||| |||| || || | || ||| | ||||| |||| | ||||| | Sbjct 240540 GGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAAT-GACATCAA 240598 Query 156359 ATCGTATGTCT 156369 || ||| |||| Sbjct 240599 ATTGTAGGTCT 240609 >seq5 Length=553973 Score = 147 bits (162), Expect = 6e-30 Identities = 501/775 (65%), Gaps = 12/775 (2%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTC 155644 ||| ||| |||| ||||| || ||||| || | || |||| || || ||||| || Sbjct 294864 CAACAGAAGCCAAGTTACAAACAGCAGTTTCGTC--CGGAGCTGAGTACTCAACAATTTC 294807 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 |||||| | ||| || ||||||| ||||| || || |||||||| || ||||| || Sbjct 294806 ACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCA 294747 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 |||||| || || | | | || || || || || | ||||| |||| ||| Sbjct 294746 AGCATCTTTATAAACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATA 294687 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATA 155824 ||| | | | || ||||| ||| | ||||| || || |||| Sbjct 294686 CCATAATTTTTGAGCCTTAATGGTCTTACCA---CGACCTTCTTTTTCGTAGCGGGTATA 294630 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGG-GCACTTATCGGGGCAAA 155883 || | | | || || |||||||| || || || ||||| || | | || | | | Sbjct 294629 TAGAGCTTCAAACTCGTCGCCGTAACAGTCGCTTAGACCAGGAGCGGCTGTTGGAG-AGA 294571 Query 155884 ACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAG 155943 ||| | |||| | ||| | ||||||| ||| || | ||| ||| | || Sbjct 294570 ACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAG 294511 Query 155944 CATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 || || | || ||||| || || | ||||| ||||| | | || | | Sbjct 294510 CAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAA 294451 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062 | || |||||||| ||| ||| ||||| |||| ||||| ||| || ||| Sbjct 294450 AATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTGT 294391 Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 |||||||| || ||||| || || || ||||| || |||| | ||| ||||| | | Sbjct 294390 TACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACC 294331 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 | || || || || || || || ||| | ||||||| ||| |||| |||||| |||| Sbjct 294330 CGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATAT 294271 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 |||| ||||||||||| | ||| ||||| ||| ||||| || | ||| | | ||| Sbjct 294270 GTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAA 294211 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||| || ||||| || || | ||| | | | | || || | ||||||| || Sbjct 294210 TACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTG 294151 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 | || ||||| || || | || || | |||||| |||| || || |||||| Sbjct 294150 GAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACAT 294096 >seq13 Length=926729 Score = 113 bits (124), Expect = 1e-19 Identities = 209/306 (68%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 426644 CCTGTCAAATCTACCAGGTCTTAGTAATGCTTTATCGAGAATATCGGGTCTATTGGTACC 426703 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| | |||| | | |||| |||||||| | ||| || ||||| Sbjct 426704 AGCTAAGACAACAACATGGTCGGCTGGAGTAAAACCATCCATTTCTACTAACATCTGATT 426763 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || ||||| || | |||| ||| |||| | ||| ||| Sbjct 426764 CAGCGTGTTCTCTCTCTCATCGTTGGCACCTGAAAAATTACCCTTTTG---CCTAGCTTT 426820 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||| |||||||||||||| || | | | || | |||| ||| ||| | Sbjct 426821 CCCTATAGCGTCAATTTCGTCAATAAACACAATCGAAGGTGCGTTTTCTCTTGCAGTCTT 426880 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||||||| | | || |||| ||||||| |||||||||||||||| ||| | Sbjct 426881 AAACAAATCTCTTACTCTTGCAGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 426940 Query 289149 GGATAC 289154 ||| || Sbjct 426941 GGAAAC 426946 >seq4 Length=1466838 Score = 104 bits (114), Expect = 7e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| |||| ||| | ||| || ||||| | | || | ||||||||| Sbjct 209613 TTTCTTGTGGTGTTATCGTAATGGACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 209672 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || |||||| || || ||||| || ||||| ||||||||||| Sbjct 209673 TGAATATAACCTGTTTCAGCTGTTTTGACGGCGGTATCGATAAGACCTTCACGACCACCC 209732 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || || |||||||| | ||||| Sbjct 209733 ATTGCGTGGAAGAAAAACTCTT 209754 Score = 95.1 bits (104), Expect = 4e-14 Identities = 133/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826 ||| |||| ||| | || ||| | || |||||| | | | || |||||| | | Sbjct 208826 TAAGTAAACAGTCAAAGAAGGAGTTTTCATGTTTTTGGCCACATTCAAAATTTCCTTTAA 208885 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||||||||||||| || || || |||||| |||||||||||||| ||||| ||||| Sbjct 208886 ACGGGGAACACCAGAAGTAACTTT---CTTGGAAGCAACACCAGCAAAATGGAAGGTATT 208942 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | ||| || | || |||||||| ||| || || | | |||||||||||| Sbjct 208943 AAGTGTCATTTGTGTGGCCGGTTCACCAATGGATTGGGCTGCTAGAACACCAACCATTTC 209002 Query 301947 TCCTGG 301952 || || Sbjct 209003 ACCAGG 209008 >seq15 Length=1061158 Score = 87.8 bits (96), Expect = 5e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| | ||||| | |||||| | |||||||||||| | | |||||||||||| | Sbjct 704728 AGCACCATAGGCAATTACACAATCTCTTTCCATTTCACCCAACCTCAGACCACCATCTCT 704787 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||||| | |||||| || ||||||| |||||||| | || | | Sbjct 704788 GGATCTACCCTCAGTAGGTTGACGTGTCAAAACAGCCCTTGGACCACGGGCTCTTGCGTG 704847 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || |||||| |||||||||||||| Sbjct 704848 CATCTTATCTAAAACCATATGCTTCA 704873 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| | |||||||||| |||||||| || ||||| ||||| | || || | Sbjct 588423 TGGGCAACAGTCATACGAGATGGAATAGCGTGAGGATTAATGATTAAATCCGGAACAATA 588482 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || || || || |||||||| || || | ||| || | |||||||| |||||||| Sbjct 588483 CCTTCTGCTGTAAATGGCATATC-TTCTCTACGATATGTGATACCAATAGTACCCTTTTG 588541 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| || || |||||||| Sbjct 588542 ACCGTGACGAGAGGCAAATTTGTCACCAAT 588571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729