Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 152 1e-31 seq4 132 1e-25 seq13 84.2 5e-11 >seq9 Length=442403 Score = 152 bits (168), Expect = 1e-31 Identities = 405/614 (66%), Gaps = 21/614 (3%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||| | || ||| | ||||| || | | || || || | Sbjct 240739 TATTTTGGGTTCAAGACTTTGGAGCGTTCGTATTTGCTAAGACTGAACGGTGAAGTGGCA 240680 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || ||| || || | ||||| ||| | ||||| || || |||||| | Sbjct 240679 GAACGGCCACAGCACTTGGTTATGCGTGTGGCGCTAGGTATCCACGGTAGTGATATCGAT 240620 Query 110424 GCTGTTATTGAATGTTA-----TGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACT 110477 |||| | | || |||||| |||||| | | | | ||| ||| | Sbjct 240619 TCTGTGCTGAAGACCTACAATTTGATGTCATTAAG-----ATATTTC-ACTCACGCTTCC 240566 Query 110478 CCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGA 110537 || ||| |||||||||| || ||| ||| || |||| || || || | | Sbjct 240565 CCAACCTTATTTAACGCTGGTACTCCACACCCCCAAATGTCTTCATGTTTCCTAATTGCC 240506 Query 110538 ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCT 110597 || || ||||| ||||||||||||||||||||| || | |||||| |||| | ||||| Sbjct 240505 ATGAAGGATGACTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCC 240446 Query 110598 AAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATC 110657 || | | || || ||||| |||| || | | || || || | ||| | ||||| Sbjct 240445 AAGACTGCAGGTGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATC 240386 Query 110658 GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACT 110717 || | || ||| |||||| ||| | |||| ||| | | || |||||| | ||| Sbjct 240385 GCCGGTACCAACGGTACTTCAAATGGGTTGATTCCTATGATTCGTGTTTTCAACAATACT 240326 Query 110718 GCAAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAA 110774 || |||||| | ||||| || |||||| ||| | ||||| | | | ||| Sbjct 240325 GCTCGTTATGTGGACCAAGGAGGCAACAAGAGACCTGGTGCCTTTGCCCTTTTCTTGGAA 240266 Query 110775 CCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAA 110834 || ||||| ||||||| || || || | || || | |||| || || | ||||| Sbjct 240265 CCATGGCACGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGG---TAAAGAA 240209 Query 110835 CAAA---GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGT 110891 ||| | ||| | |||||||| ||| |||||||| | || | || ||||||||| Sbjct 240208 GAAATTCGTGCAAGGGATTTATTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGT 240149 Query 110892 GTTCAAGAAAATGG 110905 |||||||| |||| Sbjct 240148 GTTCAAGAGGATGG 240135 >seq4 Length=1466838 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| |||||||||||| | ||||| ||| ||||||||||||||||||||||| Sbjct 210874 GATAATGATCCAGTTCTGTTCAATCGTCAACCCTCATTGCATAAAATGTCTATGATGGCT 210815 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 || | ||| ||||| | || | ||| |||||| |||| ||| || || | | || Sbjct 210814 CACAGAGTGAAAGT-TATTCCGTATTCTACATTTAGATTGAATTTATCTGTTACATCTCC 210756 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 || ||||| ||||| || || || ||||||||| | ||||| ||||| || ||| || Sbjct 210755 ATACAATGCCGATTTCGACGGTGACGAAATGAATCTTCATGTTCCTCAGTCTGAGGAAAC 210696 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | | ||| | || || ||||| |||| Sbjct 210695 AAGGGCGGAACTGTCCCAATTATGTGCTGT 210666 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | ||||| | Sbjct 211300 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGTCAACCA--CAGGC-T 211244 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 || |||| || || | || |||| |||| | || | || |||||||||||| Sbjct 211243 CTACAAAAGTCCGGTCGTCCCGTAAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGT 211184 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 ||||| |||||||| ||||||| || |||||||||||| ||||| Sbjct 211183 CGTATCAGAGGTAATTTAATGGGTAAGCGTGTTGATTTTTCAGCAAG 211137 >seq13 Length=926729 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 167643 TCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCATTCATCGTAAAAACCA 167702 ||||| || | |||||||| || || || ||| ||||| |||||||| ||||| ||| Sbjct 229376 TCGATAAAGGTCTTCCAGATCTTGATGTTACAACGACGTTTACATTCATCATAAAATCCA 229435 Query 167703 TAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746 || |||||| | | |||||||||||| || ||||||||||| Sbjct 229436 TAAACTCTTGTAACGTTAGCACATTCGTGGTTGCCTCTTAATAA 229479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337