Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq12 98.7 8e-16 seq9 98.7 8e-16 >seq12 Length=1026045 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || ||||| || || ||||| || ||||| ||| | Sbjct 54394 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 54335 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || || ||||||| ||||||||||| | || |||||| Sbjct 54334 GATACTATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGATCAA 54275 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || || | || | ||| || || ||| | ||||| || ||| || ||| |||||| Sbjct 54274 CAGAGATTGATCTTTGCTGGTAAGCAACTGGAAGACGGTAGAACCTTGTCCGACTACAAC 54215 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| || || || |||||||||| || || || |||| || Sbjct 54214 ATCCAAAAGGAGTCCACTTTACATTTAGTGTTAAGACTAAGAGGTGG 54168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || |||||||| || ||||||| ||||||||||| |||| ||| | | Sbjct 54166 ATGCAGATCTTTGTTAAGACGCTGACTGGTAAGACCATTACTCTGGAGGTCGAATCTTCC 54107 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | | || || |||||| || || ||||| | || || ||| Sbjct 54106 GACACGATTGACAACGTCAAGTCGAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 54047 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| || || ||| | |||||| | ||| | ||| ||||| Sbjct 54046 CAGAGGTTGATTTTTGCCGGTAAGCAACTTGAAGATGGCAGAACGTTATCCGACTACAAT 53987 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||| |||||||| || || || || ||||| || |||| || Sbjct 53986 ATTCAAAAGGAATCTACTCTCCACTTGGTCTTGAGATTGAGAGGTGG 53940 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||||||||| || || || || || || ||||| |||||| | ||| ||| | Sbjct 469209 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 469268 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | | || || || || ||||| ||||| | || ||| Sbjct 469269 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 469328 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| | || | ||| || || ||||| |||||| | |||| || || ||| Sbjct 469329 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTCTGTCTGACTAC 469388 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| ||||| |||||||| | || || || ||||| || |||| || Sbjct 469389 AACATCCAAAAGGAATCTACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 469438 >seq9 Length=442403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 106268 TTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGT 106327 |||||| || || |||||||| |||||||| || ||||| ||| | || || | Sbjct 63822 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 63881 Query 106328 TGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCT 106387 || | | || || ||| ||| ||||| ||||| | || ||| |||||||| | Sbjct 63882 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 63941 Query 106388 TATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAA 106447 || | ||| || || ||||| ||||| || ||| || || |||||||| ||||| Sbjct 63942 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 64001 Query 106448 AGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||| || |||| ||||| ||||| || |||| || Sbjct 64002 AGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGG 64040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329516642336