Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq12 95.1 1e-14 seq11 86.0 5e-12 >seq5 Length=553973 Score = 96.9 bits (106), Expect = 3e-15 Identities = 392/615 (64%), Gaps = 11/615 (2%) Strand=Plus/Minus Query 131636 CCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCT 131695 || |||| ||| || |||||||| || | ||| || | ||||| || |||| |||| Sbjct 294556 CCATTCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAATCT 294497 Query 131696 CTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCC 131755 || || | |||||| |||| | ||| | | || | ||| || ||||| || Sbjct 294496 CTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATATCA 294437 Query 131756 GCATGCCAGGGTTCCAAATACACTGCCATTGCGCC------TTTGCGCTTACCGCCTTGA 131809 |||||||| ||||||| |||| || | ||||| |||| ||||| || || Sbjct 294436 GCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTG---TTACCACCCTGG 294380 Query 131810 TTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTT 131869 | |||| ||| | |||| || | || || | |||||| || ||||| | | | Sbjct 294379 TCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTA 294320 Query 131870 CCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATA 131929 || || || | |||||| ||| | | | || || || | | || |||||| Sbjct 294319 CCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATA 294260 Query 131930 CCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCAC 131988 || || || || ||| || || | || |||| | | ||||| || ||||| || | Sbjct 294259 CCACCAGCAGT-TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGAT 294201 Query 131989 GCTGTCCGCGGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGC 132048 |||| | ||| |||| || || |||||||||| || | | || || || Sbjct 294200 AGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGC 294141 Query 132049 TGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGATACGATTG 132108 |||||| || || ||| || ||||| |||| | ||| | ||| | || Sbjct 294140 ATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTC 294081 Query 132109 TATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTACATGTGTTG 132168 || ||| | |||||| || | || ||| || |||||| | ||| | |||||| Sbjct 294080 TAGAGCCGCCTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTG 294021 Query 132169 AATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATAACCGTTTTCCAAAGTTTTGAA 132228 || |||||| || |||| |||| | | |||||| |||||||||||| || Sbjct 294020 TGGACGTTCGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAA 293961 Query 132229 ACCAAAATATTTGTA 132243 |||||| || |||| Sbjct 293960 ACCAAAGTAACTGTA 293946 >seq12 Length=1026045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCT 27079 || || | ||| | ||| ||||| || | ||||| || ||||||||||||||||| | | Sbjct 53940 CCACCTCTCAATCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGAT 53999 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||| || | ||||| || || |||||||| |||| | | |||||| || || || Sbjct 54000 AACGTTCTGC-CATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGG 54058 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || ||||| || || || | | | || | ||||| | | ||| || Sbjct 54059 AATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGAC 54118 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || ||||| || || |||||||| |||||| Sbjct 54119 CTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCATA 54167 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 27017 ATTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC 27076 ||| || || | ||||| || |||| || | || || || ||||||||||||||||| Sbjct 53480 ATTACCACCCCTCAACCTTAAGACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTC 53539 Query 27077 -GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCG 27135 | | | ||| || | ||||| || || |||||||| |||| | | |||||| || | Sbjct 53540 GGATAACGTTCTGC-CATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTG 53598 Query 27136 GCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTT 27195 | || | ||| || ||||| || || || | | | || | ||||| | | || Sbjct 53599 GAGGAATACCTTCCTTATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATT 53658 Query 27196 CAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || ||||| || | || || ||||| || || |||||||| |||||| Sbjct 53659 CGACCTCCAGAGTAATGGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCATA 53711 >seq11 Length=679893 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093 ||| ||||||||||| || || || ||||| || |||||||| | | | ||| || ||| Sbjct 629564 CAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGC-CGT 629622 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| | || |||||||| | || | | ||||| || || || | ||| || |||| Sbjct 629623 CTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTAT 629682 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||||||| || | | || | ||||| | | ||||||||||| ||| || | Sbjct 629683 CTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGG 629742 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAG 27239 || || |||| ||| || || ||| Sbjct 629743 TCTTACCAGTCAAAGTCTTAACGAAG 629768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934311958904