Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 309 4e-79 seq9 244 1e-59 seq2 84.2 3e-11 seq10 82.4 1e-10 >seq5 Length=553973 Score = 309 bits (342), Expect = 4e-79 Identities = 897/1368 (66%), Gaps = 36/1368 (3%) Strand=Plus/Minus Query 110725 TGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGC 110784 ||||||||| |||||||||| |||||| ||||| | ||||| || || ||||||||||| Sbjct 295388 TGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGTAGGCATTGGTGC 295329 Query 110785 CATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAG 110842 ||| ||||| ||| | || ||| | || | ||| || | | | | |||||| Sbjct 295328 CATGGTCAAAGA--GTTTCTAATACCATGCTTCATGACATCTTTCCTCAAAGTATCCCAA 295271 Query 110843 TCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCG 110902 || | || | || || |||||||| || |||||||| | ||||| || || Sbjct 295270 TCCCACATGCCGTAGGGTTTTTGGTCCCACATATCGAACTGAAGTATACCTTGAGAAGCT 295211 Query 110903 GGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCC 110962 |||||||| | |||||||| || | || | || ||| | |||||| || ||| Sbjct 295210 GGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGAGCTAGTTCACAAGAAGCTTCC 295151 Query 110963 AGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA 111022 | || || ||||| || ||||||||||| | ||| | ||| || || ||| Sbjct 295150 ATAGAGGCATGATAAATTGTTTCAAAGATTTGGATATTTAGTAAACGGGCCTCTTCAGAA 295091 Query 111023 TCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATA 111082 ||||| | | || ||| || || || || | |||||||||||||||| |||| Sbjct 295090 TCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAACCTTGAACACCCAAAGCAATT 295031 Query 111083 GGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATG 111142 ||||| |||| |||||| || ||| ||| ||||| || || |||| | ||||| Sbjct 295030 GGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATA 294971 Query 111143 ACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG-AAGTTTTTCA-----TAA 111196 |||| ||||| ||| ||||||| || | ||||| || || ||||| | || Sbjct 294970 ACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGTAATTTTTTGAAGTTGTAT 294911 Query 111197 TCAAAAGT---GCGAGTCTC------TTCATTGACATACTTTGGAAGGGCGATTGATGCC 111247 | |||| || ||| |||| ||| || ||| | ||| | || ||| Sbjct 294910 GTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGA---ACGCTGGCAAGGCAACAGAAGCC 294854 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || || |||||||| || || ||| | ||| |||||| | |||||| |||||||| Sbjct 294853 AAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCATAAGTTT 294794 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 || ||| || || || || ||||||||| ||| ||||||| ||||| || || Sbjct 294793 GATGACTTGATGACACCTAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCTTTATAA 294734 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGC 111426 | | | || || ||||| || || |||| || | ||| | | ||| || | | Sbjct 294733 ACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGA 294674 Query 111427 GGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAA 111486 | || ||||| || | || || || ||||| || || || |||||||| Sbjct 294673 GCCT----TAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAA 294618 Query 111487 CTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGGACAGAAAAGAGACCATT 111545 ||| || || |||| ||||| || || ||| |||| |||| | || ||| Sbjct 294617 CTCGTCGCCGTAACAGTCGCTTAGACCAGGAGCGGCTGT-TGGAGAGAACAAAGTCCAAG 294559 Query 111546 GACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGAT 111605 ||| || || || |||||||||||||| || |||||||| || | | ||| | || Sbjct 294558 TCCCATTCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCATAGAGCAGGAAACAAAT 294499 Query 111606 CTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATAT 111665 |||| ||| ||||| | ||| ||||| || | |||| || || | |||| Sbjct 294498 CTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAAATAT 294439 Query 111666 CCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGA 111721 | || |||||||| || || || | || | | || |||| | ||| | || Sbjct 294438 CAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTTTTG-TTACCACCCTGG 294380 Query 111722 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 111781 | ||||| || || ||| ||||| || |||| ||| ||||| | || | || | Sbjct 294379 TCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAGGTA 294320 Query 111782 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 111841 || ||||| || ||| ||| | | | | | || |||||| || | |||||| Sbjct 294319 CCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATGGATATGTAGACCAATA 294260 Query 111842 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 111901 || ||||| || || || ||||| || | | ||| | || ||||| | ||| Sbjct 294259 CCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATA 294200 Query 111902 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 111961 ||||||||||| |||||| | ||| ||| |||||| || ||| |||| ||||||||| Sbjct 294199 GAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCA 294140 Query 111962 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT-GGGACATCTTGTCGTATGTCTC 112020 || || | ||||| | || ||| | || || || | ||||| || ||||| || Sbjct 294139 TTAAACAAAGTTGGAGAGGCATGAGT-AAAGTATTTTAGAGACATTAAGTTATATGTTTC 294081 Query 112021 CAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 | | | || |||||| ||||||||||| | |||||| | ||| Sbjct 294080 TAGAGCCGCCTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCAT 294033 >seq9 Length=442403 Score = 244 bits (270), Expect = 1e-59 Identities = 916/1408 (65%), Gaps = 50/1408 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||| ||||||| || |||||| || ||||| |||| | |||||| |||| | || | Sbjct 239285 GTACATGTTTGAAGTCACTGGTTCGAAACATTCGTTAT-ATCCAAGAATTTGAGAAGTTG 239343 Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA---T 110820 |||| ||||||||||| ||||| ||||| ||| | | | || | | |||| | Sbjct 239344 AGGCAGTTGGCATTGGCGCCATTGTCAAAGA--GTTTCTTA-ATCCATGT--TTGACAAT 239398 Query 110821 G-CGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTC 110877 | | || ||| || ||||| || | | | | ||| || | |||| ||||||| Sbjct 239399 GTCCTTTCTTAAGGTT-TCCCAATCCCACAT-ACCAAATGGCTTAGCATTCC-ACATGTC 239455 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||| || || | || | || || |||||||| || || || ||| ||||| | Sbjct 239456 AAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTAGAATACTTACCTTC--C 239513 Query 110938 TTCAG--CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| | ||||||||||| || || || | || ||||| |||||||| || || | Sbjct 239514 TTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAAATGGTTTCGAAAATCTGT 239573 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATC 111054 |||| | ||||| ||||| ||||| | | || ||| || ||| | ||| Sbjct 239574 TTGTTCAAAGTTTGAGCTTCTTCTGATTCAAAAGGG-AGACGCAGCATCATATAGGTATC 239632 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || ||||||||||||||||| |||||||||| || | |||||| || |||| || Sbjct 239633 GGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCCTCATATTTGAATTTCTGGCTTC 239692 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||| |||||| |||| | ||| ||||||| ||| | || | ||||| | || | Sbjct 239693 AGGAACTGGATAATAATTACGGTCGATGACTCTGTTCAAGTTATGGGTAATGACTTTAGC 239752 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA------TTGAC 111222 |||||||| | | || ||| | || | ||| |||||| | ||| Sbjct 239753 AATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACATCTCGAC 239812 Query 111223 ATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTA 111282 | | ||| ||||| || || || | ||| ||||| || || ||||| | || Sbjct 239813 AAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAAGAATA 239872 Query 111283 CTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACT 111342 ||| | ||||| ||| |||||||| ||||| || ||||| |||| |||||| | Sbjct 239873 CTCGACGATTTCACAACACAAGTTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGT 239932 Query 111343 CTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTT 111402 ||| |||| || || |||||||| | |||| | || || || || || || |||| || Sbjct 239933 CTTTCTGTTACATGCGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTG 239992 Query 111403 GAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCT 111461 | ||| || | ||| ||| | | ||| | ||||| || | || || ||| | Sbjct 239993 TAAAATGGCATACCATAACTTTTG-GGC---TTTAATGGTTTTACCACGACCTTCCCTTT 240048 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 |||| || || || ||||||| || |||||| | || | |||||| || Sbjct 240049 CGTAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAG 240108 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 ||| | || | || ||| | ||| | || | ||| || ||||| |||||||| | Sbjct 240109 CACTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAG 240168 Query 111582 GAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTC 111641 |||||||||| | | || | ||| || ||| ||||| | ||| ||| | || Sbjct 240169 GAATCCACAGAGCAGGGAATAAATCCCTTGCACGAATTTCTTCTTTACCATGGGTTTTTC 240228 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT-CAAGATAGACTGCGATAGAT 111700 | || | || || | |||||| ||||||||||| | ||||| | | || | | Sbjct 240229 TAATATCGACAAAGTCGAAGATATCTGCGTGCCATGGTTCCAAGA-AAAGGGCAAAGGCA 240287 Query 111701 CC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 || || | | | || |||| | ||||| || || || ||| || || |||| Sbjct 240288 CCAGGTCTCTTGTTG-CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAAT 240346 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| ||||| | |||| ||| ||| || || || ||| ||| ||| | Sbjct 240347 CATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACG 240406 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | | || || | |||| ||| || || ||| || || ||||| || | Sbjct 240407 GATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTT 240466 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 | ||| |||| ||||| | || ||||| ||||| |||| || ||||| || || Sbjct 240467 CAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGA 240526 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||| || || ||| |||||||| || || | |||||| | |||||| |||| ||| | Sbjct 240527 CATTTGGGGGTGTGGAGTACCAGCGTTAAATAAGGTTGGGGAAGCGTGAGTGAA-ATATC 240585 Query 111997 TT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || |||||| | ||| |||| || |||||||| || || |||||||| || | Sbjct 240586 TTAATGACATCAAATTGTAGGTCTTCAGCACAGAATCGATATCACTACCGTGGATACCTA 240645 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 || || ||||| | || || |||||| Sbjct 240646 GCGCCACACGCATAACCAAGTGCTGTGG 240673 >seq2 Length=800085 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 164604 TATGGTCGTGTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCG 164663 || ||||| |||| ||| |||| || || || ||||| ||||||||||| ||||| Sbjct 713137 TACGGTCGCATTGCGCCAAGATCAGGCCTAGCAGTGAAAAATGGTATTCAAACCGGTGCT 713196 Query 164664 GGTGTTATTGATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGAC 164723 |||||| | || || || || |||||||| ||||| || | ||||||||| | | Sbjct 713197 GGTGTTGTCGACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTCAATCACTCACAG 713256 Query 164724 AAAGACTTTGAGGTAAAGAAAGGGGATCGCATCGCACAA 164762 | ||| || | | || ||||| |||||| | || ||| Sbjct 713257 AGAGATTTCGCCATCAAAAAAGGTGATCGCGTAGCCCAA 713295 >seq10 Length=729272 Score = 82.4 bits (90), Expect = 1e-10 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| | |||| | ||| || |||||| | ||| Sbjct 390327 GCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCG 390268 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| | |||||||||||| |||| | | ||| || ||||||||||||| | Sbjct 390267 GGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACA 390208 Query 122779 CCCTCCACACACGCAAACGC 122798 || || | | | ||||| || Sbjct 390207 CCTTCGATAGAGGCAAAGGC 390188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200