Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 178 2e-39 seq2 118 1e-21 >seq5 Length=553973 Score = 178 bits (196), Expect = 2e-39 Identities = 817/1290 (63%), Gaps = 32/1290 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||||| || ||| ||||| || ||||| | |||||| ||||||| |||||| Sbjct 295405 TACATATTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGAT 295346 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||| ||||||||| | ||| | | ||| | | | | | || | Sbjct 295345 GCAGTAGGCATTGGTGCCATGGTCAAAGAGTTTCTAATACCATGCTTCATGACATCTTTC 295286 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 | | || ||||| || | || | | | | ||||||||| ||||| || Sbjct 295285 CTCAAAGTATCCCAATCCCACATGCCGTAGGGTTTTTGGTCCCACATATCGAACTGAAGT 295226 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 |||||||| || ||||| || || | || || || ||||| || || | || | | Sbjct 295225 ATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGTCCGTCCTTTTGAGCTAGT 295166 Query 118422 TC----GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || | |||| | | |||| | ||||| ||||||||||| || | ||| | Sbjct 295165 TCACAAGAAGCTTCCATAGAGG----CATGATAAATTGTTTCAAAGATTTGGATATTTAG 295110 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 118537 | |||||| || |||||||| | | || ||| || || || || | ||| Sbjct 295109 TAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATGAAAGTGTCAGCCAAACC 295050 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGG 118597 ||| ||||| | ||||||| | |||||||||||| || | | || || || || Sbjct 295049 TTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGG 294990 Query 118598 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 118657 || |||| | ||| ||||| || |||| ||| || ||||| || | ||||| || Sbjct 294989 GTAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTG 294930 Query 118658 AAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTCAT-TGACAT--------ACTTAGG 118705 | |||| | | | | | ||| | | || | |||| | || || Sbjct 294929 TAATTTTTTGAAGTTGTATGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGAACGCTGG 294870 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 | ||| | || |||| ||||| |||| || || ||| | | | |||||| | ||| Sbjct 294869 CAAGGCAACAGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAAT 294810 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| ||| |||||||| ||| ||| || ||||| ||||| || |||||| |||| Sbjct 294809 TTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGGTTAGACTTTCTGTT 294750 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 || ||||| || |||| | | || || ||||| || ||||| | | | ||| | Sbjct 294749 GCAAGCATCTTTATAAACGACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGA 294690 Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | ||| | | ||| | | ||| || | || || |||| ||||| || Sbjct 294689 ATACCATAATTTTTGAGC---CTTAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGT 294633 Query 118946 GTAGAGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 || || ||||||||||| || || || | | || ||| || || || ||| Sbjct 294632 ATATAGAGCTTCAAACTCGTCGCCGTAACAGTCGCTTAGA--CCAGGAGCGGCTGTTGGA 294575 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 |||| | || ||| ||| ||| || || ||||||||||| || || || ||||| Sbjct 294574 GAGAACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCGGGAATCCAT 294515 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 || || | || | ||| | ||| |||||| | || || || | | || Sbjct 294514 AGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCA 294455 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTT 119179 | ||| || | ||||| || ||||| ||||||||||||| || | | || ||| Sbjct 294454 ATAAAATCAAAAATATCAGCATGCCATGGTTCCAGGTACAGGGCAAAGGCGCCAGGTCTT 294395 Query 119180 ACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 | |||| |||||| ||||| | || ||| ||||| ||||||| ||| ||||| Sbjct 294394 TTG-TTACCACCCTGGTCGACATAACGGGCGGTGTTATTAAAAACACGAATCATGGGAAT 294336 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTG 119299 | || | || || ||||| || ||| ||| | | | | | || || Sbjct 294335 TAACCCGTTAGAGGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATATTATG 294276 Query 119300 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCC 119359 ||| || | ||||||||| || || || || || || || || | | | || | Sbjct 294275 GATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTC 294216 Query 119360 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGG 119419 ||| || || ||||| ||||| |||| | |||| | ||| || ||||||||||| Sbjct 294215 GTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGG 294156 Query 119420 CCTGGGTGTACCAGCGTTGAAGAGAGTTGG 119449 | || |||||||| || || | |||||| Sbjct 294155 TTTTGGAGTACCAGCATTAAACAAAGTTGG 294126 >seq2 Length=800085 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 167948 CTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATCCAAGTTGGTGC 168007 |||||||||| | ||||||||||| || || || ||||| | |||||| ||| ||||| Sbjct 713136 CTACGGTCGCATTGCGCCAAGATCAGGCCTAGCAGTGAAAAATGGTATTCAAACCGGTGC 713195 Query 168008 GGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCA 168067 |||||||| || ||| || || |||||||| ||||| || | ||||||||| || Sbjct 713196 TGGTGTTGTCGACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTCAATCACTCACA 713255 Query 168068 CACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAA 168107 | ||||||| |||||||| || |||||| | || ||| Sbjct 713256 GAGAGATTTCGCCATCAAAAAAGGTGATCGCGTAGCCCAA 713295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435068582520