Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 235 6e-57 seq9 152 6e-32 >seq5 Length=553973 Score = 235 bits (260), Expect = 6e-57 Identities = 828/1277 (65%), Gaps = 42/1277 (3%) Strand=Plus/Plus Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| | || ||||||||||| |||| ||| ||||||||| ||| ||| | ||||| Sbjct 294126 CCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTGTTTCTTGGTCGCC 294185 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||||| ||| | ||||| || | ||| | | || ||||| || || Sbjct 294186 ATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCC 294245 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 || ||||| |||||||| | || |||||| || | | | | | ||| ||| Sbjct 294246 AAAACTGCTGGTGGTATTGGTCTACATATCCATAATATTCGTTCAACTGGTTCTTACATT 294305 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| ||| || | || | ||||| ||| |||| || ||||| ||| Sbjct 294306 GCTGGTACAAACGGTACCTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAACACC 294365 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGA 104625 || || ||||| | || | | || | |||| || | | || | || || || Sbjct 294366 GCCCGTTATGTCGACCAGGGT-GGTAACAAAAGACCTGGCGCCTTTGCCCTGTACCTGGA 294424 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 |||||||| || ||||| | || || |||| | | ||||| ||| | || || Sbjct 294425 ACCATGGCATGCTGATATTTTTGATTTTATTGATATCAGAAAGAACCACGGTAAAGAAGA 294484 Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||| | || | ||||| |||||||| ||||| ||||||||| | | Sbjct 294485 AATTC-GTGCAAGAGATTTGTTTCCTGCTCTATGGATTCCCGATCTTTTCATGAAGCGTG 294543 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACA-AGGCACCTGGTCTCTCCGAT 104803 | || |||| ||| | |||| || | || | |||| ||| || |||||||| ||| Sbjct 294544 TCGAAGAGAATGGGACTTGGACTTTGTTCTCTCCA-ACAGCCGCTCCTGGTCTAAGCGA- 294601 Query 104804 GCCGT--GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 | || || || ||||||||||| || || || ||||| |||||||||| | Sbjct 294602 -CTGTTACGGCGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGGTCGTG--- 294657 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | ||| | | ||| | | ||| | | | ||||| || || | Sbjct 294658 GTAAGACCATTAAGGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGG 294717 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 ||||||| | | |||| ||||| || || ||| |||| ||| ||||| || || | Sbjct 294718 GTACACCTTTTGTCGTTTATAAAGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTAG 294777 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 |||| |||||| || || | || ||||| | || | ||| || || | Sbjct 294778 GTGTCATCAAGTCATCAAACTTATGCTGTGAAATTGTTGAGTACTCAGCTCCGGACGAAA 294837 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT--ATGTGGATC--CAGA---- 105093 | ||||| |||||| | || || | || | || || || || | | |||| Sbjct 294838 CTGCTGTTTGTAACTTGGCTTCTGTTGCCTTGCCAGCGTTCAT-TGAAACGTCAGAGGAC 294896 Query 105094 -GACAAA----GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 | |||| |||| | | ||||| | |||||| || | ||| ||| || Sbjct 294897 GGCCAAACTTCTACATACAACTTCAAAAAATTACACGAAATTGCCAAAGTTGTTACTCGT 294956 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || ||||||||||||||||| | |||| ||||| ||||| || | | ||| ||| Sbjct 294957 AATTTAAACAGAGTTATTGATCGTAATTACTACCCTGTTGAAGAAGCGAGAAGATCCAAT 295016 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 |||||||| | ||||||| | | |||||||| ||| | || || |||| ||| Sbjct 295017 ATGAGACATAGACCAATTGCTTTGGGTGTTCAAGGTTTGGCTGACACTTTCA-----TGT 295071 Query 105269 CGCCACG-----CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGA 105323 || ||| | |||||||| || || || | | ||| | || ||||| | Sbjct 295072 TGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACTAAATATCCAAATCTTTGAAA 295131 Query 105324 CCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATG 105383 | || ||||| ||| || | || || || || | || | || || ||||| | Sbjct 295132 CAATTTATCATGCCTCTATGGAAGCTTCTTGTGAACTAGCTCAAAAGGACGGACCATACG 295191 Query 105384 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 105443 ||||||| | |||||||||||||| ||||| | ||||| || |||||||||| | Sbjct 295192 AAACCTTCCAAGGTTCTCCAGCTTCTCAAGGTATACTTCAGTTCGATATGTGGG-ACCAA 295250 Query 105444 AGACCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 105502 | ||| | || | || ||||| || | | | || ||| | || | ||| || Sbjct 295251 AAACCCTACGGCATGTGGGATTGGGATACTTTGAGGAAAGATGTCATGAAGCATGGTATT 295310 Query 105503 CGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 105562 | ||| | | |||||| |||||||| || || ||||| | ||||| |||||| || Sbjct 295311 AGAAACTCTTTGACCATGGCACCAATGCCTACTGCATCCACATCCCAAATATTGGGTTAT 295370 Query 105563 AATGAATGCTTTGAACC 105579 |||||||| |||||||| Sbjct 295371 AATGAATGTTTTGAACC 295387 >seq9 Length=442403 Score = 152 bits (168), Expect = 6e-32 Identities = 888/1394 (64%), Gaps = 60/1394 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| || || | ||||| ||||| | ||||| || || || || |||||||| Sbjct 240673 CCACAGCACTTGGTTATGCGTGTGGCGCTAGGTATCCACGGTAGTGATATCGATTCTGTG 240614 Query 104282 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || |||| ||| | |||||| ||| ||| |||| |||||| | |||||| | || Sbjct 240613 CTGAAGACCTACAATTTGATGTCATTAAGATAT-TTCACTCACGCTTCCCCAACCTTATT 240555 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 || |||||||| ||| ||||||||||| || ||||| || |||| ||||| || Sbjct 240554 TAACGCTGGTACTCCACACCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAAGGATGA 240495 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | ||||| |||| ||| | | || ||||| || || ||| || || Sbjct 240494 CTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGACTGCAGG 240435 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| |||| | || || | | | | ||| ||| ||| || || || Sbjct 240434 TGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGGTACCAA 240375 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| ||| |||| | ||||| ||| |||| || || ||| || || || ||||| Sbjct 240374 CGGTACTTCAAATGGGTTGATTCCTATGATTCGTGTTTTCAACAATACTGCTCGTTATGT 240315 Query 104581 AAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTT-GAGCCATGGCAC 104635 | |||| ||| | | || || | | || | | |||| || ||||||||| Sbjct 240314 GGACCAAG-GAGGCAACAAGAGACCTGGTGCCTTTGCCCT-TTTCTTGGAACCATGGCAC 240257 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || |||||| | || || | || | | | ||| ||| | || || | |||| Sbjct 240256 GCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGGTAAAGAAGAAATTC-GTGC 240198 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 | ||| | ||| | ||||| |||||||| || || || ||||| | ||| | ||| Sbjct 240197 AAGGGATTTATTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCAAGAGGA 240138 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGA 104814 ||| ||| || | |||| ||| || || ||| | |||| | |||||| Sbjct 240137 TGGGCCCTGGACTTTATTTTCTCCCAGTGCTGCCCCAGGTTTAGATGATGTCTGGGGTGA 240078 Query 104815 GGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCC 104874 || ||||||| || || || ||||| |||||||| | | || | Sbjct 240077 TGAATTTGAAGAGCTATATACCCGTTACGAAAGGGAAGGTCGTG---GTAAAACCATTAA 240021 Query 104875 AGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATACA 104933 ||| | | ||| | || ||| | |||| | ||||| || || |||||||| | || Sbjct 240020 AGCCCAAAAGTTATGGTATGCCATTTTACAAG-CACAAACAGAAACAGGTACACCTTTCA 239962 Query 104934 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 104993 || ||||||| ||||| |||||| ||||| || ||| |||| |||||| || || Sbjct 239961 TGGTTTACAAGGACGCATGTAACAGAAAGACAAACCAACAGAACTTGGGTACCATTAAAT 239902 Query 104994 GTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 105053 ||||| | ||| |||||| | || | | | | |||||| || || || |||| Sbjct 239901 CATCCAACTTGTGTTGTGAAATCGTCGAGTATTCTTCCCCAGATGAAACCGCCGTTTGTA 239842 Query 105054 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GAC-AAAGA---------- 105101 | || || || || || ||||| || || || || ||| | | |||| Sbjct 239841 ATCTAGCCTCTATTGCCCTCCC--AGCATTTG--TCGAGATGTCTGAAGATGGTAAAACT 239786 Query 105102 -CA---TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAAC 105157 || | | ||| || | | || ||| || | ||| | ||| | ||| | ||| Sbjct 239785 GCAAGTTATAATTTCGAGAGTTTACATGAAATTGCTAAAGTCATTACCCATAACTTGAAC 239726 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 ||||| || || | |||| ||| || ||| || | || || |||||||| || Sbjct 239725 AGAGTCATCGACCGTAATTATTATCCAGTTCCTGAAGCCAGAAATTCAAATATGAGGCAT 239666 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGAT--GTAT-TCATTCTTTGTCGCCAC 105274 | || |||| | |||||||| ||||| || ||| ||| | || || ||| || Sbjct 239665 AGACCTATTGCCTTGGGTGTTCAAGGTCTGGCCGATACCTATATGATGCTGCGTCTCC-- 239608 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 | ||||| || || ||||| | | || | || || || ||||| ||||| Sbjct 239607 -CTTTTGAATCAGAAGAAGCTCAAACTTTGAACAAACAGATTTTCGAAACCATTTATCAT 239549 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 || ||||||| || | || |||||| || || ||| ||| || || || Sbjct 239548 GCTACTCTTGAAGCCTCCTGTGAATTGGCACAGAAGGAAGGTAAGTATTCTACTTTCGAA 239489 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT 105454 ||||||||||| || | || | || |||||||| |||||| | | | || ||| || Sbjct 239488 GGTTCTCCAGCCTCTAAGGGTATTCTACAATTTGACATGTGGAATGCTAAG-CCA---TT 239433 Query 105455 CACTA----CGACTGGGAAGCTCTCAAGGAACG-CA---TCAAGGAGAAGGGTCTTCGTA 105506 || || |||||| | || ||| || | || |||| | | || | | | | Sbjct 239432 TGGTATGTGGGATTGGGAAAC-CTTAAGAAAGGACATTGTCAA--ACATGGAT-TAAGAA 239377 Query 105507 ACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAAT 105565 || | | ||||| ||||||||||| ||||| || | |||| |||||| | |||| Sbjct 239376 ACTCTTTGACAATGGCGCCAATGCCAACTGCCTCAACTTCTCAAATTCTTGGAT-ATAAC 239318 Query 105566 GAATGCTTTGAACC 105579 ||||| || ||||| Sbjct 239317 GAATGTTTCGAACC 239304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080