Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 161 2e-34 seq9 159 8e-34 seq11 152 1e-31 seq2 86.0 1e-11 >seq12 Length=1026045 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||| ||||| ||||||| ||||| || | || |||||| || Sbjct 469427 TCTCAAGACCAAGTGCAAAGTAGATTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCC 469368 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 469367 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 469308 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || |||| || || Sbjct 469307 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 469248 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 469247 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 469209 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || ||||||| ||||| |||| ||| ||||| || ||||| || ||||| || Sbjct 53741 AGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACC 53800 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| ||||| | || |||||||| || |||||||||||||| || || ||||| ||| Sbjct 53801 AGCAAAGATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCCTGAATCTTGCTCTT 53860 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || ||||| || | ||| || |||| || || || || || || | ||| Sbjct 53861 CACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTACCAGTTAGAGT 53920 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | || | |||||| Sbjct 53921 TTTGACAAAAATTTGCAT 53938 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 ||| ||||||||||||||||| ||||| | |||||| |||| || ||||| |||||||| Sbjct 53501 GACCAGGTGGAGAGTGGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCCATCTTC 53560 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || ||||| || || || || | | |||||||| || |||||||||||||| ||||| Sbjct 53561 CAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 53620 Query 225624 GATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTT 225683 || || ||| || || || ||||| || | ||| || || | || || ||||| Sbjct 53621 AATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAATGGTCTT 53680 Query 225684 GCCCGTCA 225691 || |||| Sbjct 53681 ACCAGTCA 53688 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||||||||| ||||| ||||| | |||||| |||| || ||||| || Sbjct 53951 TCTCAAGACCAAGTGGAGAGTAGATTCCTTTTGAATATTGTAGTCGGATAACGTTCTGCC 54010 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || ||||| || || || || | | |||||||| || |||||||||||||| Sbjct 54011 ATCTTCAAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTT 54070 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| || || || ||||| || | ||| || || | || || Sbjct 54071 ATCTTGAATTTTCGACTTGACGTTGTCAATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 54130 Query 225678 CGTCTTGCCCGTCA 225691 ||||| || |||| Sbjct 54131 GGTCTTACCAGTCA 54144 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| || ||||||| ||||| |||| ||| ||||| || ||||| || ||||| || Sbjct 54197 AGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAGTTGCTTACC 54256 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||| ||||| | || ||||| || || ||||||||||| ||||| || || ||| ||| Sbjct 54257 AGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTT 54316 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 || || || || || || | ||| || || || || || || || || |||||||| Sbjct 54317 GACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGT 54376 Query 225696 TTTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 54377 CTTGACAAAAATTTGCAT 54394 >seq9 Length=442403 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||||||||| | ||||| || | ||| ||||| || Sbjct 64029 TCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 63970 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 63969 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 63910 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 63909 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 63850 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || |||||||| || Sbjct 63849 GGTCTTACCAGTCAAAGTCTT 63829 >seq11 Length=679893 Score = 152 bits (168), Expect = 1e-31 Identities = 158/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||||||||| ||||||| ||||| || | |||||||| || Sbjct 629561 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGCC 629620 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| || || ||||| | || ||||||||| || || ||||||||||| Sbjct 629621 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 629680 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| ||| || |||||||| || | ||| || ||||| ||||| Sbjct 629681 ATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGAT 629740 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| || |||||||| || | ||| Sbjct 629741 GGTCTTACCAGTCAAAGTCTTAACGAA 629767 >seq2 Length=800085 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||||||||| || || ||||| || || |||||||| || |||||||| Sbjct 33619 GAAAATTTGCCCATCAGTAATGGAAATGACATTGGTTGGAATATAAGCGGAGACATCACC 33560 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | ||| || ||||| |||| || ||| Sbjct 33559 ACCTTGGGTTTCAATAACCGGCAAGGCAGTTAAAGAACCA 33520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798