Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079085.1_202017-03- 21] 17 sequences; 11,881,637 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 176 9e-39 seq12 172 1e-37 seq9 165 2e-35 >seq11 Length=679893 Score = 176 bits (194), Expect = 9e-39 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| ||| ||||||||||||||||||| | || | ||| || || Sbjct 629568 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTGCCGTCTTCC 629627 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||||||||| | |||||||||| || ||||| ||||| |||||| Sbjct 629628 AATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTATCTTGG 629687 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || ||||| |||| ||| ||||| | |||||| |||||| Sbjct 629688 ATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTA 629747 Query 283071 CCCGTCAAAGTCTTAACGAA 283090 || ||||||||||||||||| Sbjct 629748 CCAGTCAAAGTCTTAACGAA 629767 >seq12 Length=1026045 Score = 172 bits (190), Expect = 1e-37 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||||||||||||||||| || || | |||||| || | ||| || || ||||| Sbjct 469403 TTCCTTTTGGATGTTGTAGTCAGACAGAGTTCTGCCATCTTCCAATTGCTTACCAGCAAA 469344 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| | |||||||||| || ||||| ||||||||||||||||| | || || | Sbjct 469343 GATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 469284 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| |||| ||| ||||| || || || |||||||| || |||||||| || Sbjct 469283 GTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 469224 Query 283088 GAATATCTGCATTTT 283102 ||| || ||||| || Sbjct 469223 GAAAATTTGCATCTT 469209 Score = 141 bits (156), Expect = 2e-28 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTT 282954 |||||| ||| || ||||||||||||||||| | |||| || | || || || |||| Sbjct 54191 ATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTACCGTCTTCCAGTT 54249 Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 | || || ||||||||||| | ||||| || |||||||| || ||||| || || | Sbjct 54250 GCTTACCAGCAAAGATCAATCTCTGTTGATCTGGAGGAATACCTTCTTTGTCCTGAATTT 54309 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 ||| || ||| |||| ||||| || |||| ||||||||| | || || || ||||| | Sbjct 54310 TTGACTTGACGTTATCAATAGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGG 54369 Query 283075 TCAAAGTCTTAACGAATATCTGCAT 283099 |||||||||| || || || ||||| Sbjct 54370 TCAAAGTCTTGACAAAAATTTGCAT 54394 Score = 127 bits (140), Expect = 4e-24 Identities = 155/206 (75%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTT 282954 |||||| ||| || ||||||||||||||||| | |||| || | || || || |||| Sbjct 53735 ATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTACCGTCTTCCAGTT 53793 Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 | || || ||||||||||| | |||||||| |||||||| ||||| || || ||| Sbjct 53794 GCTTACCAGCAAAGATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCCTGAATC- 53852 Query 283015 TTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCC 283073 ||||| || ||| | || |||||||| |||| ||| || || || || || || ||||| Sbjct 53853 TTGCTCTTCACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTACCA 53912 Query 283074 GTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||| || || || || ||||| Sbjct 53913 GTTAGAGTTTTGACAAAAATTTGCAT 53938 >seq9 Length=442403 Score = 165 bits (182), Expect = 2e-35 Identities = 155/195 (79%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTG 282955 ||||| ||| ||||||||| ||||||||||||| |||| || | || || || | ||| Sbjct 64016 TGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCCAATTG 63958 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||||||||| | |||||||||| || ||||| ||||||||||| ||||| Sbjct 63957 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTT 63898 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | || |||||||| |||| ||| ||||| | |||||| |||||||| || Sbjct 63897 TGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGT 63838 Query 283076 CAAAGTCTTAACGAA 283090 ||||||||| || || Sbjct 63837 CAAAGTCTTGACAAA 63823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738972007118