Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq12 102 8e-17 seq10 87.8 2e-12 >seq12 Length=1029308 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || |||||||| || ||| | || || ||| | || Sbjct 66311 ATGCAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCC 66252 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||||||| |||||||| || || || | ||||| Sbjct 66251 GACACTATTGACAACG-TCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCA 66193 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || || || ||||| || | | ||| | ||||||||| Sbjct 66192 ACAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGAACCTTGTCCGACTACAA 66133 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| || ||| |||| | ||| ||||||| Sbjct 66132 CATCCAAAAAGAGTCCACTTTACATTTAGTGTT 66100 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || ||| |||| |||||| | || Sbjct 66083 ATGCAGATCTTCGTTAAGACGCTGACTGGTAAGACAATAACCCTCGAGGTCGAATCTTCC 66024 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| |||||||| || || || || || || | ||||| Sbjct 66023 GACACTATTGACAACG-TCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCACCAGACCA 65965 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || ||||| ||||| || | | ||| | ||||||||| Sbjct 65964 ACAGAGATTGATTTTTGCTGGTAAACAACTGGAAGATGGCAGAACCTTGTCCGACTACAA 65905 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| | || || || || || || | |||||||| || Sbjct 65904 CATTCAAAAGGAATCTACTCTCCACCTGGTCTTAAGGTTGAGGGGTGG 65857 >seq10 Length=707288 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 116981 GAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGC 117040 ||||||||||||||||| || | ||||| | | || ||| || || || | Sbjct 371157 GAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGA 371216 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || || ||||| || | |||| || |||||||| || || |||||| |||| || Sbjct 371217 CTAGTCGCCTTTGCTTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTC 371276 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||| | ||||| | || | ||||| || |||| ||| ||||| | || | ||| Sbjct 371277 TGGTTGAAGAAGAGAGGTATGATGCCAGGTTTGACCTTCTCTAACGAATTGATTTGCAGA 371336 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| ||| |||| ||||||||| || || ||||| |||||| Sbjct 371337 GACGAAGGTTTGCACACCGACTTTGCATGCTTATTGTTCGCCCATTTG 371384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920