Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9 105 5e-18 seq12 98.7 8e-16 >seq9 Length=431692 Score = 105 bits (116), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||||||||||||||||||||| | || ||| ||| |||||||||| Sbjct 62913 TGTAAAGTG--GATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATT 62856 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | |||||||| || ||| | Sbjct 62855 GCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCT 62796 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||||| | ||| ||||||| | || ||| | |||||| | || || | Sbjct 62795 TTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAG 62736 Query 18301 TCAATGTTTTTACAAAA 18317 |||| || || |||||| Sbjct 62735 TCAAAGTCTTGACAAAA 62719 >seq12 Length=1029308 Score = 98.7 bits (108), Expect = 8e-16 Identities = 115/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| || || ||||| ||||||||||||||||||| || ||| | | || Sbjct 65871 TAAG-ACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCCAT 65929 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||||| |||||| || ||| | || | ||| ||||| || || | |||||||||| Sbjct 65930 CTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTAT 65989 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC 18265 | ||||| | |||||| | ||| |||||| Sbjct 65990 CTTGAATTTTTGACTTGACGTTGTCAATAGTGTC 66023 Score = 95.1 bits (104), Expect = 9e-15 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179 |||| ||||| || |||||||| ||||||||||||| || ||| | | |||||||| | Sbjct 66108 ATGTAAAGTG--GACTCTTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCATCTTCCAGT 66165 Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239 || || || ||| | || | ||| ||||| || || | ||||| || || |||| Sbjct 66166 TGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATT 66225 Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299 | | |||||| | ||| |||||| | || || | ||| || ||||||| Sbjct 66226 TTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTGCCA 66285 Query 18300 GTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||||||||||||| Sbjct 66286 GTTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| |||||||| || || | || |||| ||| |||||||| ||| || || Sbjct 66571 GTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACCATCTTCCAGTTGCTTACCG 66630 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | || ||||| || || | ||||| || || ||||| | |||| Sbjct 66631 GCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTTG 66690 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| || ||| | ||| ||| | || ||| |||| |||||||| || Sbjct 66691 ACGTTATCAATGGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 66750 Query 18309 TTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 66751 TTGACAAAAATTTGCAT 66767 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | ||||||| Sbjct 475677 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTGCCATCTTCC 475618 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 475617 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 475558 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 475557 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTA 475498 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 475497 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 475466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665