Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 154 3e-32 seq10 131 3e-25 seq5 102 2e-16 >seq15 Length=1049886 Score = 154 bits (170), Expect = 3e-32 Identities = 211/296 (71%), Gaps = 18/296 (6%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| ||| |||||| || || |||| | | || | | ||||| |||||| | Sbjct 445350 ATTTGGGACGGTAATGGATCCCGTGAATATCTAGATAAGATGGGGTTCACAGATAGAAAA 445291 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||| ||||| || ||||| || |||||||||||| | ||||| |||||| |||| | Sbjct 445290 GTGGGGGATTTAGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGTGCTAAATACAAG 445231 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT------GGCCA---ATATA 35503 |||||| | ||| ||| ||||| |||||||||||||||| || || ||| | Sbjct 445230 ACCTGTGATGACGACTATGCTGGACAGGGTATTGATCAATTGAAGCAGGTCATTCATAAA 445171 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 |||||||| |||||| |||||||||| || ||||||| || |||||||| Sbjct 445170 CTAAAGAC---------AAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAATCCA 445120 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| || || |||||| | || ||||||||||| | ||||||||||| Sbjct 445119 GCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTCTCACAATTTTATGT 445064 >seq10 Length=707288 Score = 131 bits (144), Expect = 3e-25 Identities = 336/506 (66%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 101859 AGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACTAA 101915 |||||| |||||||| | | ||||| ||| | | ||| ||| | ||| | Sbjct 371158 AGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGAC 371217 Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 | || ||||||||| | | ||||| ||||||| ||| | ||||| |||||||||| Sbjct 371218 TAGTCGCCTTTGCTTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTCT 371277 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| || ||||| |||| ||| | |||| ||| || || || |||| || | Sbjct 371278 GGTTGAAGAAGAGAGGTATGATGCCAGGTTTGACCTTCTCTAACGAATTGATTTGCAGAG 371337 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 |||||||| | || ||||||||||||| | |||| | |||| || | Sbjct 371338 ACGAAGGTTTGCACACCGACTTTGCATGCTTATTGTTCGCCCA----TTTGAAGA---AC 371390 Query 102096 CATCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | | ||| || ||| ||| |||||||||| || || || |||||||||| | Sbjct 371391 AAACCAGACCCAGCAATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGA 371450 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | || | || | || ||| || | || |||||| | | |||| ||| Sbjct 371451 TACTTCTTGGACGCCTTACCAGTTGCCTTGCTAGGTATGAACGCTGACCTAATGAACCAA 371510 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATA 102269 ||| |||| || || || || | ||| ||||||| | || || ||||| |||| | Sbjct 371511 TACGTTGAGTTCGTTGCTGACAGACTTTTGGTTGCCTTCGGTAACAAGAAA--TACTACA 371568 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | || ||||||||| || ||||| || || || | | |||||||||||| | Sbjct 371569 AGGTCGAAAACCCCTTCGACTTTATGGAAAACATCTCTTTGGCTGGTAAGACCAACTTCT 371628 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||||| | || || ||| Sbjct 371629 TTGAAAAGAGAGTTTCTGATTACCAA 371654 >seq5 Length=571131 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248 |||||||| || || || |||||||| |||| | | ||||| ||||||||| ||| Sbjct 298676 GAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCAT 298617 Query 94249 AAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTATCC 94308 || ||||| |||||||| | || | |||| ||||||||||||||| ||| | ||| Sbjct 298616 AAGTTTGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCT 298557 Query 94309 TTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| | |||| ||||||| || ||||| Sbjct 298556 TTATAAACCACAAAAGGTGTACCCGTTTC 298528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583784456235