Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 187 2e-42 seq5 172 5e-38 seq10 140 3e-28 >seq9 Length=431692 Score = 187 bits (206), Expect = 2e-42 Identities = 973/1541 (63%), Gaps = 39/1541 (3%) Strand=Plus/Plus Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 |||| | |||||| || || || || || ||||| || || | | | || || || Sbjct 226176 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 226235 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| |||||||| | || |||| | | |||||||| || || ||||| ||| Sbjct 226236 GAAGTCACTGGTTCAAAACATTCGTTATACCCAAGAATTTGAGAAGTCGAGGCAGTTGGC 226295 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCA 37299 ||||| || ||| | ||||| ||||||||| | ||| |||| ||| Sbjct 226296 ATTGGCGCCATTGTTAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGATT 226355 Query 37300 TTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCTT 37357 | ||||||||| | | | ||| || | || |||||| ||| ||||||||||||| | Sbjct 226356 TCCCAATCCCACATACCAAATGGCTTAGCGTT--CCACATGTCAAATTGTAGAATACCCT 226413 Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC 37417 || ||||||||| | | | || ||| || | | | || | ||| || Sbjct 226414 TAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTCCTTCTGTGCCAATTCACAGG 226473 Query 37418 TAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477 | ||| || | |||| ||| || ||||||||||| ||| | || || ||| |||| Sbjct 226474 AGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGCTT 226533 Query 37478 CTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536 |||| | || || | ||| | ||| | ||| | ||| |||| ||| |||||||| Sbjct 226534 CTTC-CGATTCAAAGGGTAGACGCAACATCATATAGGTATCGGCCAGACCTTGAACACCC 226592 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTG 37596 | | || |||||||| ||| |||| || | | ||| |||||||||||||| Sbjct 226593 AAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATTA 226652 Query 37597 ATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTAT-TCTCAACTTGTC 37655 ||| || | | | || | || | | || ||| | |||| | | |||| || Sbjct 226653 CGATCGATGACTCTGTTCAAGTTATGGGTAATTACTTTAGCAATTTCATGTAAACTC-TC 226711 Query 37656 GAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA-------------A 37696 ||| || | || | | | ||| || || | ||| || || | Sbjct 226712 GAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGGGCAA 226770 Query 37697 TAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTAC 37756 |||| |||||||||| || || ||||||| | | | | | || || || Sbjct 226771 TAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAGGAATACTCGACGATTTCACAAC 226830 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | ||| ||| |||| || ||||| || ||| || | ||| ||||||| || | Sbjct 226831 ACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTACATGAGT 226890 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 | || || | || | || || ||| |||| |||| || | | ||| | | ||||| Sbjct 226891 CCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATTGCATACCATA 226950 Query 37877 AACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATATAA 37934 | || || |||| | | |||| | ||| | |||||| |||||| Sbjct 226951 ACTTTTGGGCCTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATATAG 227005 Query 37935 TTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAG 37994 | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | || Sbjct 227006 CTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAATAA 227065 Query 37995 AGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGT 38054 || ||| |||| | || || |||| |||||| | ||||| | ||| | |||| Sbjct 227066 AGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAGG 227125 Query 38055 AAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATC 38114 || ||||| | | | |||||| || || | ||||| | | ||| || Sbjct 227126 GAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGTC 227185 Query 38115 GAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACC 38174 ||| ||||| || ||||||||||| | ||| | | || || ||||| || | ||| Sbjct 227186 GAAGATATCTGCATGCCATGGTTCCAAGAAAAGGGCAAAGGCGCCAGGTCTCTTGTTACC 227245 Query 38175 TCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATT 38234 ||| || | | ||| | | | || || || | | | | |||||| | | ||||| Sbjct 227246 TCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGGATCATAGGAATCAACCCATT 227305 Query 38235 AGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAA 38294 || | ||||| |||||| ||||||| ||| | | || || || | || | Sbjct 227306 TGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAAG 227365 Query 38295 TCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACC 38354 || | ||||||||| || || || | ||| |||| ||| || |||||| | ||||| Sbjct 227366 ACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACC 227425 Query 38355 TTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGT 38414 ||| ||| ||||||||| || | | || ||||| ||||||||| || |||||| Sbjct 227426 TTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGAGT 227485 Query 38415 TCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATA 38474 || ||||| ||||| || || || || || |||| || || ||||| |||| || Sbjct 227486 ACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTGTA 227545 Query 38475 TGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCAT 38534 || | | ||| || ||||||| ||||| ||||| || | || | ||| | || Sbjct 227546 GGTCTTCAGCACAGACTCAATATCACTACCGTGGATACCCAGCGCCACACGCATAACCAA 227605 Query 38535 ATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGT 38594 || ||||| | ||| | || | ||| || | || | |||||| || || || Sbjct 227606 GTGCTGTGGCCGTTCAGCCACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAAGT 227665 Query 38595 TTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 || | |||||||| |||| |||| |||||||||||| Sbjct 227666 CTTGAACCCAAAATACGTATACTTGAA--ATCTCTATCGTA 227704 >seq5 Length=571131 Score = 172 bits (190), Expect = 5e-38 Identities = 413/622 (66%), Gaps = 2/622 (0%) Strand=Plus/Minus Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 ||| || || | ||| || | |||||| | ||| | |||| ||| |||||| | | | Sbjct 298365 TTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTTGCACG 298306 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 | |||||| || || |||||||| | | |||||| || |||||||| ||||| Sbjct 298305 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCATGCCA 298246 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | || | | | || || |||||||| | ||| ||||| | | ||| | Sbjct 298245 TGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 298186 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | || |||||| | | | | ||| || | || || ||||| | |||||| |||| Sbjct 298185 GGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCGTTTGTACC 298126 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 | || |||| ||| | | || || ||| || | || || ||||| ||| Sbjct 298125 AGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGT 298066 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || || ||||| |||| ||| || || || | ||||| || ||| ||| ||||| Sbjct 298065 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 298006 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 || | | | |||||| ||||||||||| |||||| || || ||||| || || Sbjct 298005 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 297946 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 ||||| ||||| | || ||||| |||| | ||||||||||||| || | || Sbjct 297945 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCAGCTTC 297886 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552 || || | ||||| || || || | || ||||| | | |||||||| | ||| Sbjct 297885 GATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGC 297826 Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 | || || | | |||| ||| || ||| || ||||| | ||||||||||| Sbjct 297825 CACTTGGCCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAATAACT 297766 Query 38613 ATA-TGAATAATCTCTATCGTA 38633 || || | ||||||| || || Sbjct 297765 GTACTGGA-AATCTCTGTCATA 297745 Score = 161 bits (178), Expect = 9e-35 Identities = 533/817 (65%), Gaps = 19/817 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| || ||||| || || || | ||| |||| ||||| Sbjct 299582 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAG 299523 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || || || | || || | | ||| ||| || ||| Sbjct 299522 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAGGAATGA 299463 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 ||| || ||| | || | |||||||||||| | | ||| ||||| || || Sbjct 299462 GATTGGTCGATATAAACAGAACGGTCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 299403 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 ||||| || ||||| |||| | || | | | ||| | || | ||| |||||| Sbjct 299402 TCCCAGACAGTTTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 299343 Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108 || || || ||| | ||| | | | ||| || | | || ||| ||| | | | Sbjct 299342 GAGCCGTTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 299285 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | || | || || || || || ||||| || || || || ||||| || | | | Sbjct 299284 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 299225 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || || ||| ||| |||||||| | ||||||| || |||||||| ||||| | Sbjct 299224 AGTACATGTTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 299165 Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCT 37286 |||| |||||||||||||| || | ||| ||||| | |||||| | | | | | Sbjct 299164 ATGCGGTAGGCATTGGTGCCATGGTCAAAG--AGTTTCTAATACCATGTTTCATGA-TAT 299108 Query 37287 CTTTTTT---AGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA-ACCACATATCAT 37342 |||| | ||| | ||||||||| | | || ||||| || | ||||||||| Sbjct 299107 CTTTCCTCAAAGT--GTCCCAATCCCA-CATGCCGTAGGGTTTTTGATCCCACATATCGA 299051 Query 37343 ATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTT 37402 | || || ||||||| | ||||||||| | | | || || || || |||| ||| Sbjct 299050 ACTGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTT 298991 Query 37403 TAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 ||||||||| ||| || ||| | | ||||| ||| |||||||| || ||||| |||| Sbjct 298990 GAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAATATTTGGATAT 298931 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 ||| || || ||||| ||| || | | | | || ||||| ||||| | Sbjct 298930 TTAGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTA 298871 Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 |||| |||||||| | | || ||||||||| || |||| ||||| || |||| | Sbjct 298870 AACCTTGAACACCCAAGGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAA 298811 Query 37583 CTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | || || ||||| ||| || | | | |||| ||| Sbjct 298810 CAGGGTAGTAATTACGATCAATAACTCTGTTTAAATT 298774 >seq10 Length=707288 Score = 140 bits (154), Expect = 3e-28 Identities = 395/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| ||| || ||||| || || |||||||||||||| | || | ||| ||||| Sbjct 371374 AACAATAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 371315 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || || ||||||| |||| || || | ||| || || | || || ||||| Sbjct 371314 AAGGTCAAACCTGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCG 371255 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 || ||||| | || || | || ||||| || |||| |||||| ||| | | || Sbjct 371254 GAGAAGAAGACACCTTCGATAGAAGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 371195 Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 || || |||||| || ||||| || || |||| || ||| | || | Sbjct 371194 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATAG 371140 Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || || | ||| |||| || || | | || ||||| || Sbjct 371139 TGTGAATGGCATTGAACAA--GAATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGAT 371082 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 ||||| || |||| |||||||||||||| || ||||| || |||||||||| Sbjct 371081 CAATAAGGAGTAAGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATAGAAACT 371022 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 371021 CTTTGCCTCTGGAATTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 370962 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 ||| ||| || || ||||| || || | ||||| || | |||| ||| || Sbjct 370961 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 370903 Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| | Sbjct 370902 TCATTCTGTTGTTCCAGTCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 370843 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 || || | | | ||||| || ||| || ||||| ||||| |||||||||| || Sbjct 370842 AAGAGGCTTCGGCACGCTTATAAGCTTGCCAAATTTCATGGTACTTGATAGGGAAAAGAA 370783 Query 12207 C 12207 | Sbjct 370782 C 370782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480