Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq12 152 4e-32 >seq12 Length=1029308 Score = 152 bits (168), Expect = 4e-32 Identities = 168/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 ||||||||||| ||||| | |||| ||| ||||| | ||||| |||||||| || | Sbjct 66094 AGTCTTAACACTAAATGTAAAGTGGACTCTTTTTGGATGTTGTAGTCGGACAAGGTTCTG 66153 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||| ||| || |||||||||||||||| |||||| || | || | ||||||| Sbjct 66154 CCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCT 66213 Query 43012 TTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACC 43068 || || |||| | | | ||||| || ||| |||||| || || || |||| Sbjct 66214 TTGTC-CTGA--ATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGG 66270 Query 43069 GTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||||| || ||||||||||| |||||||||||||| Sbjct 66271 GTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| ||||||||| | |||||||||||| Sbjct 66313 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGAT 66372 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||| |||||| |||||||||||||||| |||||| || | || Sbjct 66373 AACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 66432 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | |||||| || || ||| | | | ||||| || | | |||||| || ||| Sbjct 66433 ATACCTTCCTTATC-TTGA--ATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCG 66489 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || ||||| || || || || || || ||||| || ||||| Sbjct 66490 ACCTCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 66539 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| |||||||| | ||||| || ||| Sbjct 475695 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 475636 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 475635 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 475576 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 475575 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 475516 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 475515 TCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 475466 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 ||||| |||| |||| ||| |||||||| | ||||| |||||||| || | | Sbjct 65869 CTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCCA 65928 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || |||| |||||| || ||||||||||||| |||||| || | || | |||||| || Sbjct 65929 TCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTA 65988 Query 43015 TCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || ||| | | | ||||| || ||| |||||| || ||||| || | ||| Sbjct 65989 TC-TTGA--ATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTT 66045 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || || || || || || || || ||||| Sbjct 66046 ATTGTCTTACCAGTCAGCGTCTTAACGAAGATCTGCAT 66083 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/242 (69%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| | ||| ||||| | || || || || | || ||||| ||| Sbjct 66541 CCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGAC 66600 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | || |||| ||| || |||||||||||||| | |||||| || | || Sbjct 66601 AGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGA 66660 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | ||||||||| || |||| | | | ||||| | ||| || || || ||| Sbjct 66661 ATACCTTCTTTGTC-CTGA--ATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCG 66717 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT--TTTCTTAA 43117 || || | ||||| ||||| ||||| | ||| || |||||||||||||| | ||||| Sbjct 66718 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCATAATGTCTTAG 66777 Query 43118 TT 43119 || Sbjct 66778 TT 66779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369520984986