Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 170 2e-37 >seq10 Length=707288 Score = 170 bits (188), Expect = 2e-37 Identities = 555/852 (65%), Gaps = 29/852 (3%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||||| || || |||||| |||||||| ||||| || || Sbjct 371674 TTGGACATAACACCAGCCTTTTGGTAATCAGAAACTCTCTTTTCAAAGAAGTTGGTCTTA 371615 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTT 12960 || | || || || ||||||||||| ||||| || |||| ||| | |||||||| || Sbjct 371614 CCAGCCAAAGAGATGTTTTCCATAAAGTCGAAGGGGTTTT-CGACCTTGTAGTATTTCTT 371556 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | || | |||||||||||| ||||| | ||| || ||||||| || Sbjct 371555 GTTACCGAAGGCAACCAAAAGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTC 371496 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTAT 13077 | |||||| |||| || || || | || || || |||| ||| ||| || Sbjct 371495 AGCGTTCATACCTAGCAAGGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAAT 371439 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----A 13133 || || || ||| | || || | | | | | | || | | |||| | | Sbjct 371438 TTCCACAGCCTCGGTGACAATTTTT-TCAACAATTGCTGG---GTCTGGTTTGTTCTTCA 371383 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193 ||| |||| | |||||||| || |||||| ||||| ||||| | || | | Sbjct 371382 AATGGGCGAACAATAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATT 371323 Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253 |||| || || || | ||| ||||| | |||| || || | ||| || || | || | Sbjct 371322 CGTTAGAGAAGGTCAAACCTGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGA 371263 Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG 13313 | ||||| || || || | ||||| | | ||||| || | | ||||||||| || Sbjct 371262 AGGAACCGGAGAAGAAGACACCTTCGATAGAAGCAAAGGCGACTAGTCTTTCACCAAACA 371203 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | | ||| | |||| || ||||| | || || | || | ||| Sbjct 371202 -AGGCGTCAGCGTCTTGAATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTC 371148 Query 13373 ----ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGT 13428 ||| | | || || || || || | | |||||||| ||| || || || Sbjct 371147 TGGGATAGTGTGAATGGCATTGAACAAGAATTCACTTTCCTTAGGGTCCTTGATGTAGGT 371088 Query 13429 ATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 ||| ||||||||| || |||| |||||||||||||| ||| |||||||||||||| Sbjct 371087 ATCGATCAATAAGGAGTAAGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATA 371028 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 |||| | ||||||| | |||||||||| | | || |||| | |||||||| || Sbjct 371027 GAAACTCTTTGCCTCTGGAATTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATT 370968 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTT 13608 ||| || |||||| ||| || ||||| ||||| | |||||| | | ||||| Sbjct 370967 AACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGTT 370908 Query 13609 TTCTGACA---ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGT 13665 ||| || || ||| || ||| ||| || || ||||| | || ||| |||| Sbjct 370907 TTCGTTCATTCTGTTGTTCCAGTCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGT 370848 Query 13666 CCAAAAAGAAGC 13677 ||| ||||| || Sbjct 370847 CCAGAAAGAGGC 370836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982310705834