Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15 138 1e-27 seq2 100 3e-16 >seq15 Length=1049886 Score = 138 bits (152), Expect = 1e-27 Identities = 302/451 (67%), Gaps = 35/451 (8%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | |||| || || || ||||| ||| ||||| || || |||||||| Sbjct 444841 TTGTTCTTTCAAGGCTTCAATGTGGTCCTTATAAACATGTGCATCCCCCAGAGTATGAAT 444900 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| |||||||| | ||| || ||| ||| |||||| | || || | ||||| || Sbjct 444901 AAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAGAGCATATGA 444960 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTG--ATAACAT---TGA 6984 || | |||||| ||||| || || ||||| || || | ||| |||||| ||| Sbjct 444961 TGCAATATTAAATGGTACGCCCAACCCCATGTCACAAGAACGTTGGTATAACAAACATGA 445020 Query 6985 CAAGA------TAAAATATTG-------TCTATAG---------CATAAAATTGACACAA 7022 | | || | || ||| | | |||||||||| | || Sbjct 445021 AAGGTGGGGCTTACCAGATCCGTCTCCTTCTTTGGGGAAACTGACATAAAATTGTGAGAA 445080 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | || ||||| || ||| | || || | ||||| ||||||||||||| |||| | Sbjct 445081 AATGTGGCATGGTGGCAAAGCCATCTTGTCAAAATCAGCTGGATTCCAAGCACTCATAAT 445140 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTT-TGTTATAATTATTTG---TAATTGAT 7138 ||| | |||||||| |||||||| |||| ||| || ||| | || ||||||| Sbjct 445141 AATTCTTCTATCATAAGGATTTGTCTTTAGTTTATG----AATGACCTGCTTCAATTGAT 445196 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 | |||||||| || |||| | || ||| | | || ||||| || ||||| |||| Sbjct 445197 CAATACCCTGTCCAGCATAGTCGTCATCACAGGTCTTGTATTTAGCACCGAAATGCCTCC 445256 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACC 7229 |||| || ||||||| || |||||||| || Sbjct 445257 ATTGGAATCCATAAACGGGCCCTAAATCCCC 445287 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| || ||||| || | || | ||| |||| ||||| || ||||| ||| | Sbjct 585294 GTTAAAGTTCGTGTAAGAACTACGAAGGTTCCTCAAATTGGTGACAAATTTGCCTCTCGT 585235 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || |||||| | |||||| |||||||||||| ||||| | Sbjct 585234 CATGGTCAAAAGGGTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACAGCA 585175 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || |||||| | || || || || || ||| ||||| ||| ||||| Sbjct 585174 GAAGGTATTGTTCCGGATTTAATCATCAATCCTCACGCTATTCCATCTCGTATGAC 585119 >seq2 Length=789597 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164794 GTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATT 164853 || |||||||| || | |||| || |||||||| || || |||||||| || || Sbjct 381039 GTAGTTAATCAATTATTAGCTAAGATGGATGGTGTTGATCAATTGAATAATATATTGGTT 380980 Query 164854 GTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTA 164913 | |||||||||||||| |||||||| ||| |||| | ||||| || ||| |||| Sbjct 380979 ATTGGTATGACCAACCGTAAGGATTTAATAGATAGTGCTCTTTTACGTCCAGGTAGATTT 380920 Query 164914 GAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 ||| | || | ||||| ||||| ||| || ||||| | || |||||||| Sbjct 380919 GAAGTCCAAGTTGAAATTCATTTACCGGACGAAAAAGGAAGACTCCAAATTTT 380867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871873377200