Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 230 6e-55 seq15 125 2e-23 >seq5 Length=571131 Score = 230 bits (254), Expect = 6e-55 Identities = 708/1075 (66%), Gaps = 55/1075 (5%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | ||||| ||| |||||||| |||| || || || ||||| ||| Sbjct 297928 TTTACTCATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCT 297987 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | |||||||| || || ||||||||||| | ||||| | || | Sbjct 297988 TG-TTTCTTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGA 298046 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | |||||||| | ||| || || |||||| || ||||| || ||||| | Sbjct 298047 ATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTC 298106 Query 363726 ACAGAACAG----TTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATG 363780 ||| | ||||||| || ||| || ||| || || ||| | |||||||| Sbjct 298107 ----AACTGGTTCTTACATTGCTGGTACAAACGG-TACTTCTAACGGGTTAATTCCCATG 298161 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAG 363838 ||||||| ||| | ||||| || | || |||||||||||||| | |||| | | Sbjct 298162 ATTCGTGTTTTTAATAATACCGCCCGTTATGTCGACCAGGGTGGTAACAAAAGACC--TG 298219 Query 363839 GGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCC 363898 | || |||||| |||| || || || ||||| ||||| ||||| ||| |||| || Sbjct 298220 GTGCCTTTGCTCTGTACCTGGAACCATGGCATGCTGATATCTTTGATTTTATTGATATCA 298279 Query 363899 GGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTT 363958 | || ||| || ||||| ||| | |||||| | ||| |||| ||| || ||| || Sbjct 298280 GAAAGAACCACGGTAAAGAAGAAATTCGTGCAAGAGATTTGTTTCCTGCTCTGTGGATTC 298339 Query 363959 CTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 |||| | ||| |||||||| || || | | || |||| | | || | ||| | Sbjct 298340 CTGATCTTTTCATGAAGCGTGTCGAAGAGAATGGGACTTGGACTTTGTTCTCTCCAACAG 298399 Query 364019 AATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 ||| ||||| ||| ||| | |||||||| | || |||||||| || Sbjct 298400 CCGCTCCCGGTCTAAGCGACTGT-TACGGTGACGAGTTTGAAGCTCTATATACCCGCTAC 298458 Query 364078 GAATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 ||| | ||| | | | ||||||| ||| || || || |||||| | |||| | Sbjct 298459 GAA----AAAGAAGGTCGTGGTAAGACCATTAAAGCTCAAAAATTATGGTATTCCATTTT 298514 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 ||| | || | ||| || || ||||| | | || | || |||||| | |||||| | || Sbjct 298515 GGAAGCACAAACTGAAACGGGTACACCTTTTGTGGTTTATAAAGATGCTTGCAACAGAAA 298574 Query 364197 GTCCAACCAGCAGCACCTTGGT----ACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 ||| ||||| | || | ||| ||| ||| || ||| |||| || ||| Sbjct 298575 GTCTAACCAAAAAAACTTGGGTGTTATCAAGTCATCA----AACTTATGCTGTGAAATTG 298630 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 |||| ||| | ||||| ||||| ||||| || |||||| | || || | || | || | Sbjct 298631 TTGAGTACTCAGCTCCGGACGAAACTGCTGTTTGTAACTTGGCTTCCGTTGCCTTGCCAG 298690 Query 364313 CGT---TTGTAA------AAGATGG---TACTTTTGACCACCAGCATC-----TTTATGA 364355 ||| ||| || | || || |||| | || || | || ||| | Sbjct 298691 CGTTCATTGAAACGTCAGAGGACGGCCAAACTTCT-ACTTACAACTTCAAAAAATTA-CA 298748 Query 364356 CGTAA---CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCC 364412 || || || | || |||| | ||| | ||| ||||| || ||||| || || Sbjct 298749 CGAAATTGCCAAAGTTGTTACTCGTAATTTAAACAGAGTTATTGATCGTAATTACTACCC 298808 Query 364413 AATTCCTGAAGCCGAG-CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGG 364471 || |||| |||| | || |||||| | ||| | || |||| | ||||| || | Sbjct 298809 TGTTGAAGAAG-CGAGAAGATCCAATATGAGACATAGACCAATTGCCTTGGGTGTTCAAG 298867 Query 364472 GCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTC 364531 | | |||||| ||||||| |||| | | |||||||| || || ||| | | Sbjct 298868 GTTTAGCTGACACTTTTATGTTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTAC 298927 Query 364532 TAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGA 364586 |||||| | || ||||||||||| ||| |||| | ||| ||||| ||||| Sbjct 298928 TAAATATCCAAATATTTGAAACAATTTATCATGCCTCCATGGAAGCTTCTTGTGA 298982 >seq15 Length=1049886 Score = 125 bits (138), Expect = 2e-23 Identities = 210/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | ||||||| || ||| || | | Sbjct 445357 TGTTAAGATTTGGGACGGTAATGGATCCCGTGAATATCTAGATA-AGATGGGGTTCACAG 445299 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | ||| || ||| | || || ||||| ||||| |||||| | || || ||||| Sbjct 445298 ATAGAAAAGTGGGGGATTTAGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGTGCTA 445239 Query 111538 ACTACAAAACC----ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAAT 111593 | ||||| ||| ||| |||||| ||| | |||||| | ||||||||| || | Sbjct 445238 AATACAAGACCTGTGATG-ACGACT---ATGCTGGACAGGGTATTGATCAATTGAAGCAG 445183 Query 111594 GTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 |||||| || || | |||| || || | | | | |||||||||||||| ||||| Sbjct 445182 GTCATTCATAAACTAAAGACAAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAAT 445123 Query 111654 CCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 ||| || || || || ||||| | |||||||| || || | | || |||||||| Sbjct 445122 CCAGCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTCTCACAATTTTATGT 445064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353316113294