Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 140 3e-28 seq5 86.0 6e-12 seq11 84.2 2e-11 >seq12 Length=1029308 Score = 140 bits (154), Expect = 3e-28 Identities = 164/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || ||||||| ||| | || || || |||||||| || || ||| | |||| | Sbjct 66094 AGTCTTAACACTAAATGTAAAGTGGACTCTTTTTGGATGTTGTAGTCGGACAAGGTTCTG 66153 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||| ||| || || || | ||||||| || ||||| || ||||| |||||| Sbjct 66154 CCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCT 66213 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || ||||||||| |||| || | || | ||||||||||| || || || || || Sbjct 66214 TTGTCCTGAATTTTTGACTTGA-CGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGT 66272 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | |||||||| ||||||||||| |||||||||||||| Sbjct 66273 TATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | || || || || |||||||| ||||| |||||| | ||| | | Sbjct 66325 CTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGATAACGTTCTGCCA 66384 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| |||||| || || | ||||||| || ||||| || ||||| ||||| ||| Sbjct 66385 TCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTA 66444 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||||||||| |||| || | || | ||||||||||| ||||| || ||||||| Sbjct 66445 TCTTGAATTTTTGACTTGA-CGTTGTCGATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 66503 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| || ||||| Sbjct 66504 AGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 66539 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| ||||| ||||| || ||||| || || || |||||||| | ||| || | Sbjct 66553 CTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACCA 66612 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| | || ||||| || ||||| |||||||| Sbjct 66613 TCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTG 66672 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||||||| |||| || | || | ||| || ||||| |||||||| | || | Sbjct 66673 TCCTGAATTTTTGACTTGA-CGTTATCAATGGTATCAGAAGATTCGACTTCCAATGTTAT 66731 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||| || |||||||||||||| Sbjct 66732 GGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 66767 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||| || || || || || || ||||||||||| || || || ||| | |||| | Sbjct 65868 CCTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCC 65927 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| |||||| || || | ||||||| || ||||| || ||||| ||||| || Sbjct 65928 ATCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTT 65987 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||||||||||| |||| || | || | ||||||||||| ||||| ||||| || | Sbjct 65988 ATCTTGAATTTTTGACTTGA-CGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTA 66046 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || || || || ||||| Sbjct 66047 TTGTCTTACCAGTCAGCGTCTTAACGAAGATCTGCAT 66083 Score = 122 bits (134), Expect = 8e-23 Identities = 187/264 (71%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || || | |||| | | Sbjct 475683 CTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTGCCA 475624 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 475623 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 475564 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| || | ||||| ||||| || ||||| || |||| Sbjct 475563 TCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATA 475504 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC---GC---GCGACCAATTTAATAA 45359 || || ||||||| ||| || || |||||||||||| || || | || |||| || Sbjct 475503 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTGGCTTGTCGGCAAAATTAA-AA 475445 Query 45360 TTTAACTCTTATTTTCTTACTAAG 45383 ||||||| | |||||||| ||| Sbjct 475444 TTTAACTGCTTCTTTCTTACCAAG 475421 >seq5 Length=571131 Score = 86.0 bits (94), Expect = 6e-12 Identities = 206/312 (66%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 122832 GATTACGAATACAAATATTTTGGATACAAAACGTTAGAAAACGGATATTTGaaaaaaaTC 122891 |||| | | |||| |||||||| | |||||| || ||| ||||| || |||| Sbjct 297754 GATTTCCAGTACAGTTATTTTGGTTTCAAAACTTTGGAACGTTCTTATTTACTAAGAATC 297813 Query 122892 GAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC 122951 | | | || ||||||||| ||||| | | ||| | ||||| | ||| | ||| Sbjct 297814 AACGGCCAAGTGGCCGAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCAC 297873 Query 122952 GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACG 123011 || | ||||||||| || ||||| || | || ||||||| ||||| || || Sbjct 297874 GGTAGAGACATCGAAGCTGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACT 297933 Query 123012 CACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTT 123071 || || ||| |||||||| || || || ||||| |||| || ||||| Sbjct 297934 CATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTGTTTC 297993 Query 123072 TTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCG 123131 ||| || || || || ||| ||| ||||| || || |||||| || || || Sbjct 297994 TTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCT 298053 Query 123132 TTGATTTCCAAA 123143 |||||||||||| Sbjct 298054 TTGATTTCCAAA 298065 >seq11 Length=687600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || |||||||||||||| || || || | ||| || Sbjct 621664 CTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCG 621723 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 621724 TCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 621783 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| || | |||||| ||||| || ||||| | ||| | Sbjct 621784 TCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATG 621843 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || || || | ||| || || || Sbjct 621844 GTCTTACCAGTCAAAGTCTTAACGAA 621869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003103949320