Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 197 2e-45 seq5 194 2e-44 >seq9 Length=431692 Score = 197 bits (218), Expect = 2e-45 Identities = 791/1233 (64%), Gaps = 38/1233 (3%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||| ||||| || || ||||| | || ||||| || || || || || ||| Sbjct 226388 CCACATGTCAAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTT 226447 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || || || |||||||| || || || || | || ||||| || || || || Sbjct 226448 ACCTTCCTTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAA 226507 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAA 116243 ||| | |||| | | || || || || ||||| | ||||| ||| ||| | Sbjct 226508 AATCTGTTTGTTCAAAGTTTGAGCTTCTTCCGATTCAAAGGGTAGACGCAACATCATATA 226567 Query 116244 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 116303 ||| || |||||||| ||||| | | |||| || | ||| ||||||| || |||| Sbjct 226568 GGTATCGGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCTTCATATTTGAATTTCT 226627 Query 116304 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 116363 || || |||||| |||| | |||||| || || || | || | ||| | || Sbjct 226628 GGCTTCAGGAACTGGATAATAATTACGATCGATGACTCTGTTCAAGTTATGGGTAATTAC 226687 Query 116364 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA----- 116412 || | |||||||| | | ||| ||| | |||| ||| | ||||| Sbjct 226688 TTTAGCAATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACAT 226747 Query 116413 -TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 | |||| | || ||||| || || || |||||||| || | ||| ||||| Sbjct 226748 CTCGACAAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGA 226807 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 | ||||| | ||||| ||||||||| || |||||||| |||||||||| ||| Sbjct 226808 GGAATACTCGACGATTTCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTG 226867 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 |||| |||| | ||||| | |||||||| | ||| | || || || || || ||||| Sbjct 226868 GTTTGTCTTTCTATTACATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTG 226927 Query 116592 GGACTTG-AGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650 | |||| | ||| || | ||||| | ||| | | ||| || | || || | Sbjct 226928 TG-CTTGTAAAATTGCATACCATAACTTTTGGGC---CTTAATGGTTTTACCACGACCTT 226983 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC---ACAGCCTCTGAGAGCC 116707 || ||||| || || || | ||||| || |||||| ||| | ||| | | Sbjct 226984 CCCTTTCGTAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAA---C 227040 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 |||| || | ||| | || | || ||| | ||| |||| | ||| || ||||| | Sbjct 227041 CTGGGGCAGCACTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAA 227100 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 | ||||| || ||||| || || | ||| | ||||| || |||||| | || | Sbjct 227101 AAAGGTCAGGAATCCACAGAGCAGGGAACAAATCCCTTGCACGGATTTCTTCTTTACCAT 227160 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | | | | || | |||||| | |||||| || ||||| ||||||| | | | | Sbjct 227161 GGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGGG 227220 Query 116888 CGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 | | | || |||| || || |||| ||||| | || || ||| | Sbjct 227221 CAAAGGCGCCAGGTCTCTTGTTACCTCCT---TGGTCCACATAACGAGCAGTATTGTTGA 227277 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGA-ATACGAGA 116999 | || || | ||| ||||| | |||| || || || || || ||| ||| || | Sbjct 227278 AAACACGGATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGA-A 227336 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 | ||| || | || | || || || | ||||| ||| ||||| ||| || || Sbjct 227337 CCTGT-GGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCAT 227395 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 || || || | | | | | || || || || || |||||| |||| | || || || Sbjct 227396 AGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAG 227455 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||| || |||||||| || ||| |||||||||||||| | |||||| | ||||| Sbjct 227456 GAAACATGAAGACATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTG 227515 Query 117180 GATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 |||| ||| ||| |||||| || |||||||| || ||||| ||| || | Sbjct 227516 AGTGAA-ATATCTTAACGACATCAAATTGTAGGTCTTCAGCACAGACTCAATATCACTAC 227574 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGT 117271 |||| ||||| | | || ||||||| || || Sbjct 227575 CGTGGATACCCAGCGCCACACGCATAACCAAGT 227607 >seq5 Length=571131 Score = 194 bits (214), Expect = 2e-44 Identities = 821/1287 (64%), Gaps = 26/1287 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| || ||| ||||| || ||||| | |||||| ||||||| |||||| Sbjct 299222 TACATGTTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGAT 299163 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| ||||||||| | ||| | | ||| | | || || | Sbjct 299162 GCGGTAGGCATTGGTGCCATGGTCAAAGAGTTTCTAATACCATGTTTCATGATATCTTTC 299103 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 | | | |||||| || | || | | | ||||||||||| ||||| || Sbjct 299102 CTCAAAGTGTCCCAATCCCACATGCCGTAGGGTTTTTGATCCCACATATCGAACTGAAGT 299043 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 |||||||| || ||||| || || | || || || |||||||| || | || | | Sbjct 299042 ATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGAGCTAGT 298983 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 || | || || | || || ||||| ||||| ||||| || | ||| | | Sbjct 298982 TCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAATATTTGGATATTTAGTAAA 298923 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 |||||| || |||||||| | | ||| ||| ||||| || || | |||||| Sbjct 298922 CGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTAAACCTTGA 298863 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 ||||| | | ||||||| | |||||||||||| || ||| || || || || || Sbjct 298862 ACACCCAAGGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGGGTAG 298803 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 |||| | ||| ||||| || |||| ||| || ||||| || | ||||| || | Sbjct 298802 TAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGTAAT 298743 Query 116383 TTTTCGTAATCAAAACTGCGAGTCT---CTTCAT-TGACAT--------ACTTAGGAAGG 116430 |||| | | | || | ||| | | || | |||| | || || | | Sbjct 298742 TTTTTGAAGTTGTAAGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGAACGCTGGCAAG 298683 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || | || |||| ||||| |||| || || ||| | | | |||||| | |||||| Sbjct 298682 GCAACGGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCA 298623 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || ||||| ||| || |||||||| ||||| || |||||| |||| || Sbjct 298622 CAGCATAAGTTTGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAA 298563 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||| || || | || | | || || ||||| || ||||| | | | ||| | | | Sbjct 298562 GCATCTTTATAAACCACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATAC 298503 Query 116611 CATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 |||| | ||| | ||| || | || || || | ||||| || || Sbjct 298502 CATAATTTTTGAGCT---TTAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATAT 298446 Query 116671 AGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 || || |||||||| ||||| |||| | || ||| || || || |||| ||| Sbjct 298445 AGAGCTTCAAACTCGTCACCGTAACAGTCGCTTAGA--CCGGGAGCGGCTGTTGGAGAGA 298388 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 | | || ||| ||| ||| || || ||||||||||| || || || ||||| || | Sbjct 298387 ACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAG 298328 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | | || | ||| | ||| |||||| | || || || | | || | || Sbjct 298327 CAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAA 298268 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTGCGA 116904 | || | |||||| || ||||| ||||||||||||| || | | ||| ||| | Sbjct 298267 AATCAAAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTG- 298209 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 |||| |||||| ||||| | || || ||||| || |||| ||| ||||| | Sbjct 298208 TTACCACCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAAC 298149 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATCGTGGAT 117023 || | ||| || ||||| || ||| || || ||| | | | | ||||| Sbjct 298148 CCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTT-GAACGAATGTTATGGAT 298090 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || | ||||||||| || || || || || || || || | | | || |||| Sbjct 298089 ATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTA 298030 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 || || ||||| ||||| |||| | |||| | ||| || |||||||| || | Sbjct 298029 AATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTT 297970 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGG 117170 ||| |||||||| || || | ||||| Sbjct 297969 TGGAGTACCAGCATTAAACAAAGTTGG 297943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507069629720