Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq12 127 5e-24 seq9 105 2e-17 seq11 95.1 3e-14 >seq12 Length=1029308 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| ||||||| ||||||||| | ||| || || ||||||||||| ||||| || Sbjct 66114 AGTGGACTCTTTTTGGATGTTGTAGTCGGACAAGGTTCTGCCATCTTCCAGTTGCTTACC 66173 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||| || || | | ||| ||||| ||| ||| |||||| |||||||| ||| ||| Sbjct 66174 GGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTT 66233 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| || | ||||| | | ||| || || | || || || || || || ||||| Sbjct 66234 GACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTGCCAGTTAGAGT 66293 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 66294 TTTGACAAAAATTTG 66308 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| ||||| ||||||||||| | ||||| || | || || || || Sbjct 66324 TCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGATAACGTTCTGCC 66383 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||| || || ||||| || || | | ||| ||||| ||| ||| ||||| Sbjct 66384 ATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTT 66443 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||| ||| ||| ||| |||| ||||| | | ||| || |||| || || Sbjct 66444 ATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 66503 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || || || ||||| || || Sbjct 66504 AGTCTTACCAGTCAGCGTCTTGACAAAGATCTG 66536 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || | || | || || || || || | ||| || |||| || || || || Sbjct 66552 TCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACC 66611 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||||| ||||| ||||| || || | | ||| ||||| ||| ||| |||||| Sbjct 66612 ATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTT 66671 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 |||||||| ||| ||| ||| || | ||| || | | ||| || ||||| || || Sbjct 66672 GTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGACTTCCAATGTTAT 66731 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || | ||| || ||||||||||| Sbjct 66732 GGTTTTACCGGTCAAAGTCTTGACAAAAATTTG 66764 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| ||||||||||| || |||||||| | ||||||||| | ||| || || |||||||| Sbjct 65874 GACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCCATCTTC 65933 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||| || || || || || || | | ||| ||||| || ||| ||||| || || Sbjct 65934 CAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTATCTTG 65993 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||| ||| ||| ||| || | ||||| | | ||| || || | || || ||||| Sbjct 65994 AATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATTGTCTT 66053 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || || || Sbjct 66054 ACCAGTCAGCGTCTTAACGAAGATCTG 66080 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | ||| || |||||||||| ||||||||||| ||| || || || Sbjct 475684 TCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTGCC 475625 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||||| || || ||||| | | || ||||| || || ||||| Sbjct 475624 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 475565 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || || | ||||| | | ||| || || | || || Sbjct 475564 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 475505 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || | ||| || || |||||||| Sbjct 475504 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTG 475472 >seq9 Length=431692 Score = 105 bits (116), Expect = 2e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| ||| | ||| | ||| || || ||||| | ||||||||||| ||| || || || Sbjct 62926 TCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 62867 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| || || ||||| | | || ||||| || || ||||| Sbjct 62866 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 62807 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || ||||||||| ||| || || | ||||| | | ||| || ||||| ||||| Sbjct 62806 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 62747 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAA 199621 |||||||| || | ||| || |||||| Sbjct 62746 GGTCTTACCAGTCAAAGTCTTGACAAAA 62719 >seq11 Length=687600 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||||| || | || | ||| || |||||||||| ||||||||||| ||||| || || Sbjct 621663 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 621722 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||||| ||||| ||||| ||||| | | || ||||| || || ||||| Sbjct 621723 GTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 621782 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| || || | |||||| | | ||| || || || ||||| Sbjct 621783 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGAT 621842 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAA 199620 |||||||| || | ||| || || || Sbjct 621843 GGTCTTACCAGTCAAAGTCTTAACGAA 621869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921343216139