Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9 152 2e-31 seq5 147 6e-30 seq13 118 3e-21 seq4 107 6e-18 seq15 84.2 6e-11 >seq9 Length=431692 Score = 152 bits (168), Expect = 2e-31 Identities = 222/311 (71%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || || ||||| |||||||| || ||||| |||| | ||||||||| | Sbjct 227241 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGGATCATAGGAATCAAC 227300 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||||| || ||||| ||| |||| ||||| | || || | || | |||| Sbjct 227301 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 227360 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| || ||||| ||| ||||| || | ||||| || Sbjct 227361 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 227420 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 |||||||||||||| ||||| | ||| | | ||| | || ||| | ||| || || Sbjct 227421 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGT 227480 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTATTAGACATATA 156358 || || ||||||||||||| || || | || ||| | ||||| |||| ||||| | Sbjct 227481 GGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTA-ACGACATCAA 227539 Query 156359 ATCGTATGTCT 156369 || ||| |||| Sbjct 227540 ATTGTAGGTCT 227550 >seq5 Length=571131 Score = 147 bits (162), Expect = 6e-30 Identities = 241/347 (69%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 ||||||| ||| ||| ||||| |||| |||||| |||| || ||| |||||| Sbjct 298259 ATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCC 298200 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || ||||| || || || ||||| || |||| | ||| ||||| | || || ||| Sbjct 298199 TGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAA 298140 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 || || || || || ||| | ||||||| ||| |||| ||||| |||||||| ||| Sbjct 298139 GTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCA 298080 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 |||||||| | ||| ||||| ||| ||||| || | ||| | | ||||||| || Sbjct 298079 ATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCG 298020 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 ||||| || || | ||| | | | | || || | ||||||| ||| || ||| Sbjct 298019 ATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCA 297960 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || || || | || || | |||||| |||| || || |||||| Sbjct 297959 GCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACAT 297913 >seq13 Length=935281 Score = 118 bits (130), Expect = 3e-21 Identities = 210/306 (69%), Gaps = 3/306 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 433681 CCTGTCAAATCTACCAGGCCTTAGTAATGCTTTATCAAGAATATCGGGTCTATTGGTACC 433740 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| | || | | | |||| |||||||| | ||| |||||||| Sbjct 433741 AGCTAAGACAACAACATGGTCAGCTGGAGTAAAGCCATCCATTTCTACTAACATTTGATT 433800 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || ||||| || | |||| ||| |||| | ||| ||| Sbjct 433801 TAGCGTGTTCTCTCTCTCATCGTTAGCACCTGAAAAATTACCCTTTTG---CCTAGCTTT 433857 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||| |||||||||||||| || | | | || | ||||| ||| ||| | Sbjct 433858 CCCTATAGCGTCAATTTCGTCAATAAACACAATCGAAGGTGCATTTTCTCTTGCAGTCTT 433917 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| |||||||| | | || |||| ||||||| |||||||||||||||| ||| | Sbjct 433918 AAATAAATCTCTTACTCTTGCAGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 433977 Query 289149 GGATAC 289154 || || Sbjct 433978 AGAAAC 433983 >seq4 Length=1469832 Score = 107 bits (118), Expect = 6e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| ||| |||| ||| | ||| || ||||| | | || | ||||||||| Sbjct 209230 TTTCTTGTGGTGTTATCGTAATGGACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 209289 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || |||||| ||||| ||||| || ||||| ||||||||||| Sbjct 209290 TGAATATAACCTGTTTCAGCTGTTTTAACAGCGGTATCGATAAGACCTTCACGACCACCC 209349 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || || |||||||| | ||||| Sbjct 209350 ATTGCGTGGAAGAAAAACTCTT 209371 Score = 100 bits (110), Expect = 8e-16 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826 ||| |||| ||| | || ||| | || |||||| | | | || |||||||| | Sbjct 208443 TAAGTAAACAGTCAAAGAAGGAGTTTTCATGTTTTTGGCCACATTCAAAATTTCTTTTAA 208502 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||||||||||||| || || || |||||| |||||||||||||| ||||| ||||| Sbjct 208503 ACGGGGAACACCAGAAGTAACTTT---CTTGGAAGCAACACCAGCAAAATGGAAGGTATT 208559 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | ||| || | || |||||||| ||| || || | | |||||||||||| Sbjct 208560 TAGTGTCATTTGTGTGGCCGGTTCACCAATGGATTGGGCTGCTAGAACACCAACCATTTC 208619 Query 301947 TCCTGG 301952 || || Sbjct 208620 ACCAGG 208625 >seq15 Length=1049886 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| | |||||||||| |||||||| || ||||||||||| | || || | Sbjct 585110 TGGGCAACAGTCATACGAGATGGAATAGCGTGAGGATTGATGATTAAATCCGGAACAATA 585169 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTG 251957 || || || || || ||||||| ||| || | ||| || | |||||||| |||||||| Sbjct 585170 CCTTCTGCTGTAAATGGCATAT-CTTCTCTACGATATGTGATACCAATAGTACCCTTTTG 585228 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 || |||||||| || || |||||||| Sbjct 585229 ACCATGACGAGAGGCAAATTTGTCACCAAT 585258 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| | ||||| | |||||| | |||||| ||||| | | |||||||||||| | Sbjct 695257 AGCACCATAGGCAATTACACAATCTCTTTCCATCTCACCCAACCTCAGACCACCATCCCT 695316 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||| | | |||||| || || |||| |||||||| |||| | || Sbjct 695317 GGATCTACCTTCAGTAGGTTGACGTGTCAAGACAGCCCTTGGACCACGAGCTCTTGCATG 695376 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || |||||| |||||||||||||| Sbjct 695377 CATCTTATCTAAAACCATATGCTTCA 695402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729