Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq9 167 6e-36 seq5 156 1e-32 seq4 123 6e-23 seq10 102 2e-16 >seq9 Length=431692 Score = 167 bits (184), Expect = 6e-36 Identities = 405/609 (67%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||| | || ||| | ||||| || | | || || || | | Sbjct 227680 TATTTTGGGTTCAAGACTTTGGAGCGTTCGTATTTGCTAAGACTGAACGGTGAAGTGGCT 227621 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || ||| || || | ||||| ||| | ||||| || || ||||||| | Sbjct 227620 GAACGGCCACAGCACTTGGTTATGCGTGTGGCGCTGGGTATCCACGGTAGTGATATTGAG 227561 Query 110424 GCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| | | || || | || || || | | | | ||| ||| | || || Sbjct 227560 TCTGTGCTGAAGACCTACAATTTGATGTCGTTAAGATATTTC-ACTCACGCTTCCCCAAC 227502 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 | |||| ||||| || ||| ||| || |||| || || || | | || || Sbjct 227501 CTTATTCAACGCTGGTACTCCACATCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAA 227442 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| ||||||||||||||||||||| || | |||||| |||| | ||||| || | Sbjct 227441 GGATGACTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGAC 227382 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | || || ||||| |||| || | | || || || | ||| | ||||||| Sbjct 227381 TGCAGGTGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGG 227322 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||||| ||| | |||| ||| | | || |||||| | ||||| Sbjct 227321 TACCAACGGTACTTCAAATGGGTTGATTCCTATGATCCGTGTTTTCAACAATACTGCTCG 227262 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||| ||| |||||| |||| | ||||| | | | ||||| || Sbjct 227261 TTATGTGGACCAAGGAGGTAACAAGAGACCTGGCGCCTTTGCCCTTTTCTTGGAACCATG 227202 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| ||||||| || || || | || || | |||| || || | ||||| ||| Sbjct 227201 GCATGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGG---TAAAGAAGAAAT 227145 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| || ||| |||||||| | || | || |||||||||||||| Sbjct 227144 CCGTGCAAGGGATTTGTTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCA 227085 Query 110897 AGAAAATGG 110905 ||| |||| Sbjct 227084 AGAGGATGG 227076 >seq5 Length=571131 Score = 156 bits (172), Expect = 1e-32 Identities = 560/865 (65%), Gaps = 18/865 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||||||||||||| | |||||| |||||||||| | |||| ||| | | Sbjct 297769 TATTTTGGTTTCAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGCCAAGTGGCC 297828 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| |||||| | || | | || || | || || || || || || || Sbjct 297829 GAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCACGGTAGAGACATCGAA 297888 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| | | ||| ||| | || | | ||| | || |||||| |||| || Sbjct 297889 GCTGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACTCATGCCTCTCCAACT 297948 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATTAA 110542 | ||||| || || ||| | ||| || | ||||| |||||| | | || || Sbjct 297949 TTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTCGCCATGAA 298007 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || |||||||| || || | |||||| |||| | ||||| |||| Sbjct 298008 GGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCCAAAAC 298067 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || | ||| | ||||| |||| || | | || || Sbjct 298068 TGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATTGCTGG 298127 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | || | |||| ||| | | || || || | || || Sbjct 298128 TACAAACGGTACTTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAATACCGCCCG 298187 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||| || ||| ||| | |||||| | || || ||||| || Sbjct 298188 TTATGTCGACCAGGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCTGGAACCATG 298247 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||| ||||| || | || | | || || || || | ||||| ||| Sbjct 298248 GCATGCTGATATCTTTGATTTTATTGATATCAGAAAGAACCACGG---TAAAGAAGAAAT 298304 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| ||| ||| |||||||| | ||| | |||||||| ||||| | Sbjct 298305 TCGTGCAAGAGATTTGTTTCCTGCTCTGTGGATTCCTGATCTTTTCATGAAGCGTGTCGA 298364 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCC-TCATCGTTCTCCTGGTCTATCTGA-TGTA 110954 ||| ||||| | ||| || | | | ||| || | |||| |||||| || ||| Sbjct 298365 AGAGAATGGGACTTGGACTTTGTTCTCTCCAACAGC-CGCTCCCGGTCTAAGCGACTGT- 298422 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || | |||||||||| || || || ||||||||||| | | || Sbjct 298423 TACGGTGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGG---TCGTGGTAAG 298479 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| ||||||| || | |||| || | ||| ||||| |||||| || || Sbjct 298480 ACCATTAAAGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGGGTACA 298539 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||| | | | ||||||||| | || | || ||||| |||| || || || Sbjct 298540 CCTTTTGTGGTTTATAAAGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTGGGTGTT 298599 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || || ||||||| Sbjct 298600 ATCAAGTCATCAAACTTATGCTGTG 298624 >seq4 Length=1469832 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||| Sbjct 210491 GATAATGATCCAGTTCTGTTCAACCGTCAACCCTCATTGCATAAAATGTCTATGATGGCT 210432 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 || | ||| ||||| | || | ||| |||||| |||| ||| | || | | || Sbjct 210431 CACAGAGTGAAAGT-TATTCCGTATTCCACATTTAGATTGAATTTGTCTGTTACATCTCC 210373 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 || ||||| ||||| || || || ||||||||| | || |||||||| || ||| || Sbjct 210372 ATACAATGCCGATTTCGACGGTGACGAAATGAATCTTCACGTACCTCAGTCCGAGGAAAC 210313 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | | ||| | || || ||||| |||| Sbjct 210312 AAGGGCAGAACTGTCCCAATTATGTGCTGT 210283 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | ||||| | Sbjct 210917 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGCCAACCA--CAGGC-T 210861 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 || |||| || || | || |||| |||| | || | || |||||||||||| Sbjct 210860 CTACAAAAGTCCGGTCGTCCCGTAAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGT 210801 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 |||||| | |||||| ||||||| || |||||||||||| ||||| Sbjct 210800 CGTATTAGGGGTAATTTAATGGGTAAGCGTGTTGATTTTTCAGCAAG 210754 >seq10 Length=707288 Score = 102 bits (112), Expect = 2e-16 Identities = 343/528 (65%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 |||||||| | |||||| || ||| || | || |||||| |||| ||| | || || Sbjct 370842 TTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGGAACAACAGAA-- 370899 Query 131549 TTGAATGAAAAAGA------TTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGAT 131602 |||| ||||| || |||| |||| | ||||||||| || ||||||| ||| Sbjct 370900 -TGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCCGCTTCTGAC 370958 Query 131603 GGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA-GAAATTGATATTCCTGAAGT 131661 || ||||||| |||||| | ||| || ||| | || ||| || | ||||| || | Sbjct 370959 GGTATTGTTAATGAAAACTTGGTTGAAAACTTC-TCCACCGAAGTTCAAATTCCAGAGGC 371017 Query 131662 AACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATT 131721 || ||||| || ||| | ||||| ||||||| || | || || || Sbjct 371018 AAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACTTACTCCTT 371077 Query 131722 ATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTG---ATGCTGT 131778 |||||| || | || | || || | | ||| | |||| || |||| | Sbjct 371078 ATTGATCGATAC-CTACATCAAG--GACCCTAAGGAAAGTGAATTCTTGTTCAATGCCAT 371134 Query 131779 AAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGA 131838 | | | || | ||| |||| || || |||||| | | |||||||||||| | Sbjct 371135 TCACACTATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGC 371194 Query 131839 TTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTC 131898 | ||| ||| | |||||| || || ||||||| | | |||||| | ||||| || Sbjct 371195 TGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCTTCTATCGAAGGTGTCTTCTTCTC 371254 Query 131899 AGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATT 131958 ||| | ||| | || || ||| | |||||| | || ||||||| || | | || Sbjct 371255 CGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTTTGACCTT 371314 Query 131959 GTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || || |||| || | ||||| |||| ||||| || || ||||| Sbjct 371315 CTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGC 371362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337