Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq12 125 6e-24 seq9 89.7 5e-13 >seq12 Length=1029308 Score = 125 bits (138), Expect = 6e-24 Identities = 176/244 (72%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 25161 TTCAATTAA-ACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATC 25219 || || ||| ||| |||||| | ||||| || || || ||||| ||| | || || | Sbjct 66782 TTTAACTAAGACATTATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTG 66723 Query 25220 GAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGT 25279 ||||||||| | ||||| || || | || || ||||||| || ||||| ||| Sbjct 66722 GAAGTCGAATCTTCTGATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGT 66663 Query 25280 ATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA- 25338 || || || || || || || | |||| | ||| || ||||| ||||||| ||||| Sbjct 66662 ATTCCTCCAGACCAACAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACA 66603 Query 25339 -TGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAG 25397 |||| | |||| || ||||| |||||||| ||| | ||||||||| | |||||||||| Sbjct 66602 CTGTCTG--ATTATAACATTCAGAAAGAATCTACCTTGCATTTAGTGCTGAGATTGAGAG 66545 Query 25398 GAGG 25401 | || Sbjct 66544 GTGG 66541 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| || ||| | || || | || || ||| | | Sbjct 66311 ATGCAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCC 66252 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || ||||||| || ||||| ||||| || || || || Sbjct 66251 GACACTATTGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 66192 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | |||| | ||| || ||||| ||||||| |||| |||| ||| |||| Sbjct 66191 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGAACCTTGTC--CGACTACA 66134 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 | || |||||||| ||||| | ||||||||||||||| | ||||| || Sbjct 66133 ACATCCAAAAAGAGTCCACTTTACATTTAGTGTTAAGACTAAGAGGTGG 66085 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || | || || || | || || | || |||||| | | Sbjct 66539 ATGCAGATCTTTGTCAAGACGCTGACTGGTAAGACTATTACTCTGGAGGTCGAATCTTCC 66480 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||||||| ||||| || ||||| || || || || Sbjct 66479 GACACGATCGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 66420 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | |||| | ||| |||||||| ||||||| |||| | |||||||||| Sbjct 66419 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGCAGAACGTTATCCGATTACAAT 66360 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| || || || |||| || || || ||||||||||| || Sbjct 66359 ATTCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 66313 >seq9 Length=431692 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || || || || | ||||| | ||||| ||| | || ||||| Sbjct 62720 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 62779 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 62780 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 62839 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| ||||||| Sbjct 62840 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATTCAAA 62897 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| | || ||||| || ||||||||||| || Sbjct 62898 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGG 62937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094305417440