Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 324 2e-83 seq9 233 2e-56 seq10 86.0 8e-12 >seq5 Length=571131 Score = 324 bits (358), Expect = 2e-83 Identities = 911/1385 (66%), Gaps = 34/1385 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | || ||||||||| |||||||||| |||||| ||||| | ||||| Sbjct 299223 GTACATGTTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGA 299164 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || |||||||||||||| ||||| ||| | || ||| | | | |||| | Sbjct 299163 TGCGGTAGGCATTGGTGCCATGGTCAAAGA--GTTTCTAATACCATGTTTCATGATATCT 299106 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 | | | | | ||||| || | || | || || |||||||| || |||||| Sbjct 299105 TTCCTCAAAGTGTCCCAATCCCACATGCCGTAGGGTTTTTGATCCCACATATCGAACTGA 299046 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | ||||| || || |||||||| | |||||||| || | || | || ||| Sbjct 299045 AGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGAGCT 298986 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| || |||| ||| || ||||| || |||||||| || | ||| | Sbjct 298985 AGTTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAATATTTGGATATTTAGT 298926 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 ||| || || |||||||| | | || ||| ||||| || || | |||| Sbjct 298925 AAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTAAACCT 298866 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 111124 ||||||||||| |||| ||||| |||| |||||| || ||| ||| ||||| || Sbjct 298865 TGAACACCCAAGGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGGG 298806 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG- 111183 || |||| | ||||| |||| ||||| ||| ||||||| || | ||||| || Sbjct 298805 TAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGT 298746 Query 111184 AAGTTTTTCA-----TAATCAAAAGT---GCGAGTCTC------TTCATTGACATACTTT 111229 || ||||| | ||| | |||| || ||| |||| ||| || | Sbjct 298745 AATTTTTTGAAGTTGTAAGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGA---ACGCT 298689 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || | ||| | || ||||| || |||||||| || || ||| | ||| |||||| | | Sbjct 298688 GGCAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACA 298629 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| |||||||| || ||| || ||||| || ||||||||| ||| || Sbjct 298628 ATTTCACAGCATAAGTTTGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTG 298569 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||| || || | || | || || ||||| || || |||| || | ||| Sbjct 298568 TTGCAAGCATCTTTATAAACCACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATG 298509 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 111469 | | ||| | || | | | ||||| || | || || || ||||| Sbjct 298508 GAATACCATA-ATTTTTG--AGCTTTAATGGTCTTACCACGACCTTCTTTTTCGTAGCGG 298452 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGC-CTTGTCTGG 111528 || || || ||||||||||| ||||| |||| ||||| || || ||| ||| Sbjct 298451 GTATATAGAGCTTCAAACTCGTCACCGTAACAGTCGCTTAGACCGGGAGCGGCTGT-TGG 298393 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | |||| | || ||| ||| || || || |||||||||||||| || |||||||| Sbjct 298392 AGAGAACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCA 298333 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 ||| | | ||| | |||||| ||| ||||| | ||| ||||| || | || Sbjct 298332 CAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATC 298273 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 111704 || || || | |||||| || |||||||| || || || | || | | || || Sbjct 298272 AATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCT 298213 Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 || | ||| | || | ||||| || || || ||||| || |||| ||| |||| Sbjct 298212 TTTG-TTACCACCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAA 298154 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 111824 | | || | || ||| ||||| || ||| ||| | | | | | | || Sbjct 298153 TTAACCCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTAT 298094 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 |||| || | |||||||| ||||| || || || ||||| || | | ||| Sbjct 298093 GGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGT 298034 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || ||||| | ||| ||||||||||| |||||| | ||| ||| |||||| || | Sbjct 298033 CGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAG 297974 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTT-GGGAC 112003 || |||| ||||||||||| || | ||||| | || ||| | || || || | ||| Sbjct 297973 GTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAGT-AAAGTATTTTAGAGAC 297915 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||||| || | ||| || |||||| ||||||||||| | |||||| Sbjct 297914 ATTAAGTTATATGTTTCTAGAGCAGCTTCGATGTCTCTACCGTGGATGCCCAGTGCGACT 297855 Query 112064 CGCAT 112068 | ||| Sbjct 297854 CTCAT 297850 >seq9 Length=431692 Score = 233 bits (258), Expect = 2e-56 Identities = 914/1410 (65%), Gaps = 54/1410 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||| ||||||| || ||||||||| ||||| |||| |||||||| |||| | || | Sbjct 226226 GTACATGTTTGAAGTCACTGGTTCAAAACATTCGTTAT-ACCCAAGAATTTGAGAAGTCG 226284 Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA---T 110820 |||| ||||||||||| ||||| ||||| ||| | | | || | | |||| | Sbjct 226285 AGGCAGTTGGCATTGGCGCCATTGTTAAAGA--GTTTCTTA-ATCCATGT--TTGACAAT 226339 Query 110821 G-CGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTC 110877 | | || ||| ||| ||||| || | | | | ||| || | |||| ||||||| Sbjct 226340 GTCCTTTCTTAAGATT-TCCCAATCCCACAT-ACCAAATGGCTTAGCGTTCC-ACATGTC 226396 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||| || || | || | || || |||||||| || || || ||| ||||| | Sbjct 226397 AAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTC--C 226454 Query 110938 TTCAG--CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGA 110995 ||| | ||||||||||| || || || | || ||||| |||||||| || || | Sbjct 226455 TTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGT 226514 Query 110996 GCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATC 111054 |||| | ||||| || || ||||| | |||| ||| || ||| | ||| Sbjct 226515 TTGTTCAAAGTTTGAGCTTCTTCCGATTCAAAGG-GTAGACGCAACATCATATAGGTATC 226573 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || ||||||||||||||||| |||||||||| || |||||| || |||| || Sbjct 226574 GGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTC 226633 Query 111115 CTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT 111174 ||| |||||| |||| | || ||||||| ||| | || | ||||| | || | Sbjct 226634 AGGAACTGGATAATAATTACGATCGATGACTCTGTTCAAGTTATGGGTAATTACTTTAGC 226693 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA------TTGAC 111222 |||||||| | | || ||| | || | ||| |||||| | ||| Sbjct 226694 AATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACATCTCGAC 226753 Query 111223 ATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTA 111282 | | ||| ||||| || || || | ||| ||||| || || ||||| | || Sbjct 226754 AAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAGGAATA 226813 Query 111283 CTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACT 111342 ||| | ||||| ||| || ||||| ||||| || ||||| |||| |||||| | Sbjct 226814 CTCGACGATTTCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGT 226873 Query 111343 CTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTT 111402 ||| | || || | |||||||| | |||| | || || || || || || |||| || Sbjct 226874 CTTTCTATTACATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTG 226933 Query 111403 GAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCT 111461 | ||| || | ||| ||| | | | || ||||| || | || || ||| | Sbjct 226934 TAAAATTGCATACCATAACTTTTGGGCCT----TAATGGTTTTACCACGACCTTCCCTTT 226989 Query 111462 CGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT 111521 |||| || || || ||||||| || |||||| | || | |||||| || Sbjct 226990 CGTAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAG 227049 Query 111522 TGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTG 111581 ||| | || | || ||| | ||| | || | ||| || ||||| |||||||| | Sbjct 227050 CACTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAG 227109 Query 111582 GAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGT 111640 |||||||||| | | || | ||| | | ||| || ||||| | ||| ||| | | Sbjct 227110 GAATCCACAGAGCAGGGAACAAATCCCTTGCACGGA-TTTCTTCTTTACCATGGGTTTTT 227168 Query 111641 CGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT-CAAGATA-----GACTGCG 111694 | | || | || || | |||||| || |||||||| | ||||| | | ||| Sbjct 227169 CTAATATCGACAAAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGGGCAAAGGCG 227228 Query 111695 ATAGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGA 111754 || || ||| | || |||| | ||||| || || || ||| || || || Sbjct 227229 CCAGGTCTCTTGTTA---CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGG 227285 Query 111755 AGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCT 111814 | ||| ||||| | |||| ||| ||| || || || ||| ||| ||| Sbjct 227286 ATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAA 227345 Query 111815 CTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 111874 | | | | || || | |||| ||| || || ||| || || ||||| || Sbjct 227346 CGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCT 227405 Query 111875 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 111934 | | ||| |||| ||||| | || ||||| ||||| |||| || ||||| || Sbjct 227406 TTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAA 227465 Query 111935 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 111994 ||||| || || ||| |||||||| ||||| | |||||| | |||||| |||| ||| Sbjct 227466 GACATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAA-ATA 227524 Query 111995 CCTT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCC 112053 ||| |||||| | ||| |||| || ||||| ||||| || |||||||| || Sbjct 227525 TCTTAACGACATCAAATTGTAGGTCTTCAGCACAGACTCAATATCACTACCGTGGATACC 227584 Query 112054 GATTGCGACCCGCATGAACATGTACTGTGG 112083 | || || ||||| | || || |||||| Sbjct 227585 CAGCGCCACACGCATAACCAAGTGCTGTGG 227614 >seq10 Length=707288 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||| || |||| | |||| | ||| || |||||| | |||| Sbjct 371362 GCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCT 371303 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| | |||||||||||| |||| | | ||| || ||||||||||||| | Sbjct 371302 GGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACA 371243 Query 122779 CCCTCCACACACGCAAACGC 122798 || || | | | ||||| || Sbjct 371242 CCTTCGATAGAAGCAAAGGC 371223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200