Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 214 2e-50 seq2 118 1e-21 >seq5 Length=571131 Score = 214 bits (236), Expect = 2e-50 Identities = 813/1269 (64%), Gaps = 24/1269 (2%) Strand=Plus/Minus Query 118199 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGC 118258 ||| ||||| || ||||| | |||||| ||||||| |||||| || || ||||| ||||| Sbjct 299205 TGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGATGCGGTAGGCATTGGTGC 299146 Query 118259 CATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTC 118318 |||| | ||| | | ||| | || | | || || | | | || |||||| || Sbjct 299145 CATGGTCAAAGAGTTTCTAATACCATGTTTCATGATATCTTTCCTCAAAGTGTCCCAATC 299086 Query 118319 GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGG 118378 | || | | | | ||||||||| ||||| || |||||||| || ||||| Sbjct 299085 CCACATGCCGTAGGGTTTTTGATCCCACATATCGAACTGAAGTATACCTTGAGAAGCTGG 299026 Query 118379 CGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAG 118438 || || | || || || |||||||| || | || | ||| | || || | Sbjct 299025 AGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGAGCTAGTTCACAAGAAGCTTCCAT 298966 Query 118439 GGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATC 118498 || || ||||| ||||||||||| || | ||| | | |||||| || ||||| Sbjct 298965 GGAGGCATGATAAATTGTTTCAAATATTTGGATATTTAGTAAACGGGCCTCTTCAGAATC 298906 Query 118499 AAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGG 118558 ||| | | || ||| ||||| || || | |||||| ||||| | | ||||||| Sbjct 298905 AAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTAAACCTTGAACACCCAAGGCAATTGG 298846 Query 118559 GCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAAC 118618 | |||||||||||| || | | || || || || || |||| | ||| ||||| Sbjct 298845 TCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATAAC 298786 Query 118619 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 118678 || |||| ||| || ||||| || | ||||| || | |||| | | | || | Sbjct 298785 TCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGTAATTTTTTGAAGTTGTAAGT 298726 Query 118679 GCGAGTCT---CTTCAT-TGACAT--------ACTTAGGAAGGGCGATTGACGCCAGATT 118726 ||| | | || | |||| | || || | ||| | || |||| || Sbjct 298725 AGAAGTTTGGCCGTCCTCTGACGTTTCAATGAACGCTGGCAAGGCAACGGAAGCCAAGTT 298666 Query 118727 ACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACT 118786 ||| |||| || || ||| | | | |||||| | |||||| ||| |||||||| Sbjct 298665 ACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCATAAGTTTGATGA 298606 Query 118787 CTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCAT 118846 ||| || |||||||| ||||| || |||||| |||| || ||||| || |||| || Sbjct 298605 CTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCTTTATAAACCAC 298546 Query 118847 GTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG 118906 | || || ||||| || ||||| | | | ||| | | ||| | | |||| Sbjct 298545 AAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCT-- 298488 Query 118907 CACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTC 118966 | ||| || | || || |||| ||||| || || || ||||||||||| || Sbjct 298487 -TTAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAACTCGTC 298429 Query 118967 ACC--CACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCA 119024 ||| || | | || ||| || || || ||| |||| | || ||| ||| Sbjct 298428 ACCGTAACAGTCGCTTAGA--CCGGGAGCGGCTGTTGGAGAGAACAAAGTCCAAGTCCCA 298371 Query 119025 CCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGA 119084 ||| || || ||||||||||| || || || ||||| || || | || | ||| | Sbjct 298370 TTCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTT 298311 Query 119085 CAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCG 119144 ||| |||||| | || || || | | || | ||| || | |||||| || Sbjct 298310 GCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCA 298251 Query 119145 TGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTACGACGACCAGCCTGGTTTAC 119200 ||||| ||||||||||||| || | | ||| ||| | |||| |||||| || Sbjct 298250 TGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTG-TTACCACCCTGGTCGAC 298192 Query 119201 ATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATT 119260 ||| | || || ||||| ||||||| ||| ||||| | || | || || || Sbjct 298191 ATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCGTT 298132 Query 119261 TGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 119320 ||| || ||| ||| | | | | | | ||||| || | ||||||||| || Sbjct 298131 TGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACC 298072 Query 119321 TGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 119380 || || || || || || || | | | || |||| || || ||||| ||||| Sbjct 298071 AGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTC 298012 Query 119381 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAA 119440 |||| | |||| | ||| || ||||||||||| | || |||||||| || || Sbjct 298011 CTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAA 297952 Query 119441 GAGAGTTGG 119449 | |||||| Sbjct 297951 CAAAGTTGG 297943 >seq2 Length=789597 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 167948 CTACGGTCGCGTGGCGCCAAGATCTGGACTCGCTGTGAAGAGTGGTATCCAAGTTGGTGC 168007 |||||||||| | ||||||||||| ||||| || ||||| | ||||| ||| ||||| Sbjct 703696 CTACGGTCGCATTGCGCCAAGATCAGGACTAGCAGTGAAAAACGGTATTCAAACCGGTGC 703755 Query 168008 GGGTGTTGTTGATCCAGACTATACGGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGGCA 168067 ||||||||||| ||| || || |||||||| ||||| || | ||||||||| || Sbjct 703756 TGGTGTTGTTGACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTCAATCACTCACA 703815 Query 168068 CACAGATTTCCAAATCAAAAAGGGGGATCGCATCGCGCAA 168107 | ||||||| ||||| || || |||||| | || ||| Sbjct 703816 GAGAGATTTCGCCATCAAGAAAGGTGATCGCGTAGCCCAA 703855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435068582520