Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 235 6e-57 seq9 145 9e-30 seq2 91.5 2e-13 >seq5 Length=571131 Score = 235 bits (260), Expect = 6e-57 Identities = 829/1278 (65%), Gaps = 44/1278 (3%) Strand=Plus/Plus Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| | || ||||||||||| |||| ||| ||||||||| ||| ||| | ||||| Sbjct 297943 CCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTGTTTCTTGGTCGCC 298002 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||||| ||| | ||||| || | ||| | | || ||||| || || Sbjct 298003 ATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCC 298062 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 || ||||| |||||||| | || |||||| | | | | | | ||| ||| Sbjct 298063 AAAACTGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATT 298122 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| ||| || | || | ||||| ||| |||| || ||||| || Sbjct 298123 GCTGGTACAAACGGTACTTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAATACC 298182 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGA 104625 || || ||||| | || | | || | |||| || | | || | || || || Sbjct 298183 GCCCGTTATGTCGACCAGGGT-GGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCTGGA 298241 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 |||||||| || |||||| | || || |||| | | ||||| ||| | || || Sbjct 298242 ACCATGGCATGCTGATATCTTTGATTTTATTGATATCAGAAAGAACCACGGTAAAGAAGA 298301 Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||| | || | ||||| |||||||| ||||| ||||||||| | | Sbjct 298302 AATTC-GTGCAAGAGATTTGTTTCCTGCTCTGTGGATTCCTGATCTTTTCATGAAGCGTG 298360 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACA-AGGCACCTGGTCTCTCCGAT 104803 | || |||| ||| | |||| || | || | |||| ||| || || ||||| ||| Sbjct 298361 TCGAAGAGAATGGGACTTGGACTTTGTTCTCTCCA-ACAGCCGCTCCCGGTCTAAGCGA- 298418 Query 104804 GCCGT--GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 | || ||||| ||||||||||| || || || ||||| |||||||||| | Sbjct 298419 -CTGTTACGGTGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGGTCGTG--- 298474 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | |||| | | ||| | | ||| | | | ||||| || || | Sbjct 298475 GTAAGACCATTAAAGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGG 298534 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 ||||||| | || |||| ||||| || || ||| |||| ||| ||||| || |||| Sbjct 298535 GTACACCTTTTGTGGTTTATAAAGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTGG 298594 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 |||| |||||| || || | || ||||| | || | ||| || || | Sbjct 298595 GTGTTATCAAGTCATCAAACTTATGCTGTGAAATTGTTGAGTACTCAGCTCCGGACGAAA 298654 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT--ATGTGGATC--CAGA---- 105093 | ||||| |||||| | || || | || | || || || || | | |||| Sbjct 298655 CTGCTGTTTGTAACTTGGCTTCCGTTGCCTTGCCAGCGTTCAT-TGAAACGTCAGAGGAC 298713 Query 105094 -GACAAA----GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 | |||| || | | | ||||| | |||||| || | ||| ||| || Sbjct 298714 GGCCAAACTTCTACTTACAACTTCAAAAAATTACACGAAATTGCCAAAGTTGTTACTCGT 298773 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || ||||||||||||||||| | |||| ||||| ||||| || | | ||| ||| Sbjct 298774 AATTTAAACAGAGTTATTGATCGTAATTACTACCCTGTTGAAGAAGCGAGAAGATCCAAT 298833 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA-TTCTTTG 105267 |||||||| | ||||||| | |||||||| ||| | || || || || | || Sbjct 298834 ATGAGACATAGACCAATTGCCTTGGGTGTTCAAGGTTTAGCTGA------CACTTTTATG 298887 Query 105268 TCGCCACG-----CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAG 105322 | || ||| | |||||||| || || || | | ||| | |||||||| Sbjct 298888 TTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACTAAATATCCAAATATTTGAA 298947 Query 105323 ACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATAT 105382 || || ||||| ||| | | || || || || | || | || || ||||| Sbjct 298948 ACAATTTATCATGCCTCCATGGAAGCTTCTTGTGAACTAGCTCAAAAGGACGGCCCATAC 299007 Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 105442 |||||||| | |||||||||||||| ||||| | ||||| || |||||||||| | Sbjct 299008 GAAACCTTCCAAGGTTCTCCAGCTTCTCAAGGTATACTTCAGTTCGATATGTGGG-ATCA 299066 Query 105443 GAGACCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 | ||| | || | || ||||| || | | | || |||| | | | ||| | Sbjct 299067 AAAACCCTACGGCATGTGGGATTGGGACACTTTGAGGAAAGATATCATGAAACATGGTAT 299126 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 | | ||| | | |||||| |||||||| || || ||||| | ||||| |||||| | Sbjct 299127 TAGAAACTCTTTGACCATGGCACCAATGCCTACCGCATCCACATCCCAAATATTGGGTTA 299186 Query 105562 TAATGAATGCTTTGAACC 105579 ||||||||| |||||||| Sbjct 299187 TAATGAATGTTTTGAACC 299204 >seq9 Length=431692 Score = 145 bits (160), Expect = 9e-30 Identities = 882/1392 (63%), Gaps = 56/1392 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| || || | ||||| ||||| | ||||| || || || ||||| ||||| Sbjct 227614 CCACAGCACTTGGTTATGCGTGTGGCGCTGGGTATCCACGGTAGTGATATTGAGTCTGTG 227555 Query 104282 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || |||| ||| | |||||| ||| ||| |||| |||||| | |||||| | || Sbjct 227554 CTGAAGACCTACAATTTGATGTCGTTAAGATAT-TTCACTCACGCTTCCCCAACCTTATT 227496 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| |||||||| ||| ||||||||||| || ||||| || |||| ||||| || Sbjct 227495 CAACGCTGGTACTCCACATCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAAGGATGA 227436 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | ||||| |||| ||| | | || ||||| || || ||| || || Sbjct 227435 CTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGACTGCAGG 227376 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| |||| | || || | | | | ||| ||| ||| || || || Sbjct 227375 TGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGGTACCAA 227316 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| ||| |||| | ||||| ||| | || || || ||| || || || ||||| Sbjct 227315 CGGTACTTCAAATGGGTTGATTCCTATGATCCGTGTTTTCAACAATACTGCTCGTTATGT 227256 Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT-----CTATCTT-GAGCCATGGCA 104634 | ||| || || ||| || || ||| | | |||| || |||||||| Sbjct 227255 GGACCAA---GGAGGTAACAAGAGACCTGGCGCCTTTGCCCTTTTCTTGGAACCATGGCA 227199 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 || |||||| | || || | || | | | ||| ||| | || || | ||| Sbjct 227198 TGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGGTAAAGAAGA-AATCCGTG 227140 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | ||| | ||| | ||||| |||||||| || || || ||||| | ||| | ||| Sbjct 227139 CAAGGGATTTGTTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCAAGAGG 227080 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| ||| || | |||| ||| || || ||| | |||| | ||||| Sbjct 227079 ATGGGCCCTGGACTTTATTTTCTCCCAGTGCTGCCCCAGGTTTAGATGATGTCTGGGGTG 227020 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | || ||||||| || || || ||||| |||||||| | | || | Sbjct 227019 ATGAATTTGAAGAGCTATATACCCGTTACGAAAGGGAAGGTCGTG---GTAAAACCATTA 226963 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | | ||| | || ||| | |||| | ||||| || || |||||||| | | Sbjct 226962 AGGCCCAAAAGTTATGGTATGCAATTTTACAAG-CACAAACAGAAACAGGTACACCTTTC 226904 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||| ||||||| ||| | ||||| ||||| || ||| |||| |||||| || || Sbjct 226903 ATGGTTTACAAGGACTCATGTAATAGAAAGACAAACCAACAGAACTTGGGTACCATTAAA 226844 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 |||||| | ||| |||||| | || | | | | |||||| || || || ||| Sbjct 226843 TCATCCAATTTGTGTTGTGAAATCGTCGAGTATTCCTCCCCAGATGAAACCGCCGTTTGT 226784 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GAC-AAAGA--------- 105101 || || || || || || ||||| || || || || ||| | | |||| Sbjct 226783 AATCTAGCCTCTATTGCCCTCCC--AGCATTTG--TCGAGATGTCTGAAGATGGTAAAAC 226728 Query 105102 --CA---TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 || | | ||| || | | || ||| || | ||| | ||| | ||| | || Sbjct 226727 TGCAAGTTATAATTTCGAGAGTTTACATGAAATTGCTAAAGTAATTACCCATAACTTGAA 226668 Query 105157 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216 |||||| || ||| | |||| ||| || ||| || | || || ||||||| || Sbjct 226667 CAGAGTCATCGATCGTAATTATTATCCAGTTCCTGAAGCCAGAAATTCAAATATGAAGCA 226608 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 105276 | || |||| | |||||||| ||||| || ||| | || | | || | | Sbjct 226607 TAGACCTATTGCCTTGGGTGTTCAAGGTCTGGCCGATACCTATATGATGTTGCGTCTACC 226548 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 ||||| || || ||||| | | || | || || || ||||| ||||| || Sbjct 226547 CTTTGAATCGGAAGAAGCTCAAACTTTGAACAAACAGATTTTCGAAACCATCTATCATGC 226488 Query 105337 CGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 ||||||| || | || |||||| || || ||| ||| || || || || Sbjct 226487 TACTCTTGAAGCCTCCTGTGAATTGGCACAGAAGGAAGGTAAGTATTCCACTTTCGAAGG 226428 Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA 105456 ||||||||| || | || | || |||||||| |||||| | | | || ||| || Sbjct 226427 TTCTCCAGCCTCTAAGGGTATTCTACAATTTGACATGTGGAACGCTAAG-CCA---TTTG 226372 Query 105457 CTA----CGACTGGGAAGCTCTCAAGGAACG-CA---TCAAGGAGAAGGGTCTTCGTAAC 105508 || || |||||| ||| ||| || | || |||| | | || | | | ||| Sbjct 226371 GTATGTGGGATTGGGAA-ATCTTAAGAAAGGACATTGTCAA--ACATGGAT-TAAGAAAC 226316 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGA 105567 | | ||||| ||||||||||| ||||| || | |||| |||||||| |||| || Sbjct 226315 TCTTTAACAATGGCGCCAATGCCAACTGCCTCGACTTCTCAAATTCTTGGGT-ATAACGA 226257 Query 105568 ATGCTTTGAACC 105579 ||| |||||||| Sbjct 226256 ATGTTTTGAACC 226245 >seq2 Length=789597 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 154116 TTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCGGGTGTTGTTG 154175 |||||||| |||| || || || |||||| | ||||| ||| ||||| |||||||||| Sbjct 703707 TTGCGCCAAGATCAGGACTAGCAGTGAAAAACGGTATTCAAACCGGTGCTGGTGTTGTTG 703766 Query 154176 ATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGACAAAGACTTTG 154235 | || ||||| |||||||| ||||| || | ||||||||| | | | ||| || | Sbjct 703767 ACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTCAATCACTCACAGAGAGATTTCG 703826 Query 154236 AGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGA 154275 | |||| ||||| ||| | || ||| | |||| || Sbjct 703827 CCATCAAGAAAGGTGATCGCGTAGCCCAATTAATTCTCGA 703866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080