Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 120 2e-22 seq11 91.5 9e-14 >seq12 Length=1029308 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||| ||||| | || || || |||||||||||||| || Sbjct 66541 CCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGAC 66600 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| ||||| ||||||||||| || || | ||||||||| || || Sbjct 66601 AGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGA 66660 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||||| || ||| || ||| || || || || Sbjct 66661 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGAC 66719 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || |||||||| ||||| Sbjct 66720 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 66767 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | ||||| ||||| | |||| ||| ||||| ||||| || || || Sbjct 66085 CCACCTCTTAGTCTTAACACTAAATGTAAAGTGGACTCTTTTTGGATGTTGTAGTCGGAC 66144 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| ||||| ||||||||||| || || | ||||||||| || || Sbjct 66145 AAGGTTCTGCCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 66204 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||||| || ||| | ||| ||||| || || Sbjct 66205 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 66263 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| ||||| || |||| ||||| |||||||| ||||| Sbjct 66264 CTCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || ||||| |||||||||||| || ||||| || Sbjct 66313 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGAT 66372 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| ||||||||||||||||| || || | ||||||||| || || Sbjct 66373 AACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 66432 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| ||| ||| ||||| || ||| | || ||||| || || Sbjct 66433 ATACCTTCCTTATCT-TGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 66491 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || ||||| || | ||| || ||||| |||||||| Sbjct 66492 CTCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 66539 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||| |||||||| |||||||||||||| || || || | |||| | ||| Sbjct 65872 AAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCCATCT 65931 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || ||||||||||| ||||| || || | ||||||||| || || | || ||||| ||| Sbjct 65932 TCCAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTATCT 65991 Query 34615 GTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 ||| ||||| || ||| | ||| ||||| || || || | |||||| || Sbjct 65992 -TGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATTGT 66050 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || | ||| || || || |||||||| Sbjct 66051 CTTACCAGTCAGCGTCTTAACGAAGATCTGCAT 66083 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || | |||| |||||||| ||||| || || || Sbjct 475695 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 475636 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 475635 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 475576 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 475575 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 475517 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| | ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 475516 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 475465 >seq11 Length=687600 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| | |||| |||||||| ||||| || || || Sbjct 621652 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 621711 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | ||| ||||||||||| || || | |||||||| || || Sbjct 621712 AAAGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGG 621771 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||||||| |||||| Sbjct 621772 ATACCTTCCTTGTCTTGGATCTT 621794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729534791961