Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq12 145 2e-29 seq9 140 8e-28 seq11 129 1e-24 >seq12 Length=1029308 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||||| || | || | ||||||||||||||||||||| || || | | ||| || Sbjct 66094 AGTCTTAACACTAAATGTAAAGTGGACTCTTTTTGGATGTTGTAGTCGGACAAGGTTCTG 66153 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||||||||| ||||| || || || || | | |||||||| ||||||| ||||| Sbjct 66154 CCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCT 66213 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| || ||| || ||||| || || ||||| || ||||||||| || || Sbjct 66214 TTGTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTT 66273 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || ||||| || ||||| | ||||| Sbjct 66274 ATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 141 bits (156), Expect = 2e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||||||||| ||||| ||||| || || ||||| | | || || || Sbjct 66324 TCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGATAACGTTCTGCC 66383 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||| || || || || || || | | |||||||| ||||||| |||||||| Sbjct 66384 ATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTT 66443 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || || || ||| || ||||| ||||| ||||| || ||| ||||| ||||| || Sbjct 66444 ATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAGAGTAAT 66503 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 66504 AGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 66539 Score = 138 bits (152), Expect = 3e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | |||||| || ||||||||||| || || | | ||| || || Sbjct 475684 TCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTGCC 475625 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || || ||||| | | |||||||||||| || | |||||||| Sbjct 475624 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 475565 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || || || || || |||||||| |||||| || || || || Sbjct 475564 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 475505 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || || | ||||| || Sbjct 475504 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 475466 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210900 CTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCA 210959 |||| ||| ||||| ||||| || || ||||| ||||| || || | | ||| || ||| Sbjct 65869 CTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTGCCA 65928 Query 210960 TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTG 211019 |||||||| || || || || || || | | |||||||| || |||| |||||||| Sbjct 65929 TCTTCCAGTTGTTTACCAGCAAAAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTA 65988 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATC 211079 || || || ||| || ||||| || || ||||| || ||| |||||||| || || Sbjct 65989 TCTTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATT 66048 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 66049 GTCTTACCAGTCAGCGTCTTAACGAAGATCTGCAT 66083 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||| || ||||||||||| | || || || ||||||||||| ||||| || Sbjct 66571 GTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACCATCTTCCAGTTGCTTACCG 66630 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | |||||||| ||||||| ||||| |||||||| || ||| || Sbjct 66631 GCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTTG 66690 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 ||||| || ||||| ||||| ||| || || | || || || || || || | |||| Sbjct 66691 ACGTTATCAATGGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 66750 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 66751 TTGACAAAAATTTGCAT 66767 >seq9 Length=431692 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| | ||| | ||| | |||||| |||||||| ||||| || || | | ||| || || Sbjct 62926 TCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 62867 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||| ||||| || || ||||| | | |||||||||||| || | |||||||| Sbjct 62866 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 62807 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || |||||| || || || || || |||||||| |||||| || | |||||| Sbjct 62806 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 62747 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | |||||| ||||| Sbjct 62746 GGTCTTACCAGTCAAAGTCTTGACAAA 62720 >seq11 Length=687600 Score = 129 bits (142), Expect = 1e-24 Identities = 142/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 |||||| || ||||||||||| || || | | || || || ||||||| ||||| || Sbjct 621681 AGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCCAATTGCTTACC 621740 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 || ||||| | | |||||||||||| || | ||||||||||| |||||||| || Sbjct 621741 GGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTT 621800 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || || || ||||||||||| |||||| || | |||||| ||||| || || | ||| Sbjct 621801 GACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGTCAAAGT 621860 Query 211097 CTTTACAAA 211105 ||| || || Sbjct 621861 CTTAACGAA 621869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151747522205