Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq11 176 9e-39 seq12 174 3e-38 seq9 165 2e-35 >seq11 Length=687600 Score = 176 bits (194), Expect = 9e-39 Identities = 159/200 (80%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| ||| ||||||||||||||||||| | || | || || || Sbjct 621670 ACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCC 621729 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | ||| || |||||||||||||| | |||||||||| || ||||| |||||||||||| Sbjct 621730 AATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 621789 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| | || || | || || ||||| |||| ||| ||||| | |||||| |||||| Sbjct 621790 ATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTA 621849 Query 283071 CCCGTCAAAGTCTTAACGAA 283090 || ||||||||||||||||| Sbjct 621850 CCAGTCAAAGTCTTAACGAA 621869 >seq12 Length=1029308 Score = 174 bits (192), Expect = 3e-38 Identities = 168/213 (79%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| || || ||| ||| ||||||||||||||||||| |||| || | |||||| || Sbjct 475677 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAG-GTTCTGCCATCTTC 475619 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||| || || ||||||||||| | |||||||||| || ||||| ||||||||||| Sbjct 475618 CAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTG 475559 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||| | || || | || |||||||| |||| ||| ||||| || || || ||||| Sbjct 475558 GATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTT 475499 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||| || |||||||| ||||| || ||||| || Sbjct 475498 ACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 475466 Score = 165 bits (182), Expect = 2e-35 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| ||||| ||||||||||| | |||| || | |||||| || |||||||| || |||| Sbjct 65892 TTCCTTTTGAATGTTGTAGTCGGACAAG-GTTCTGCCATCTTCCAGTTGTTTACCAGCAA 65950 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | ||||| | |||||||| |||||||| ||||| ||||| || |||| || ||| Sbjct 65951 AAATCAATCTCTGTTGGTCTGGTGGAATACCTTCCTTATCTTGAATTTTTGACTTGACGT 66010 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | || |||||||| |||| |||||| ||||| || || |||||||| |||| ||||||| Sbjct 66011 TGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATTGTCTTACCAGTCAGCGTCTTAA 66070 Query 283087 CGAATATCTGCAT 283099 |||| |||||||| Sbjct 66071 CGAAGATCTGCAT 66083 Score = 138 bits (152), Expect = 2e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTT 282954 |||||| ||| |||||||||||||||||||| | |||| || | |||||| || |||| Sbjct 66108 ATGTAAAGTGGACTCTTTTTGGATGTTGTAGTCGGACAAG-GTTCTGCCATCTTCCAGTT 66166 Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 | || |||||||| ||||| | |||||||| |||||||| || ||||| || || | Sbjct 66167 GCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTT 66226 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 ||| || ||| | || |||||||| |||| ||| || || || || || || || || | Sbjct 66227 TTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTGCCAG 66286 Query 283075 TCAAAGTCTTAACGAATATCTGCAT 283099 | | ||| || || || || ||||| Sbjct 66287 TTAGAGTTTTGACAAAAATTTGCAT 66311 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | || | || || | ||| || || |||||| || ||||| || |||| Sbjct 66540 ACCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGA 66599 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || | ||||| || ||||| || |||||||| ||||| | |||||||| || Sbjct 66600 CAGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGG 66659 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || ||||| || || |||| || ||| |||| || || || |||| |||||| Sbjct 66660 AATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGAC 66719 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | || || || ||||| ||||||||||| || || || ||||| Sbjct 66720 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 66767 >seq9 Length=431692 Score = 165 bits (182), Expect = 2e-35 Identities = 155/195 (79%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 282897 TGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTG 282955 ||||| ||| ||||||||| ||||||||||||| |||| || | || || || | ||| Sbjct 62913 TGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAG-GTTCTACCGTCTTCCAATTG 62855 Query 282956 TTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT 283015 || || ||||||||||| | |||||||||| || ||||| ||||||||||| ||||| Sbjct 62854 CTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTT 62795 Query 283016 TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 || || || | || |||||||| |||| ||| ||||| | |||||| |||||||| || Sbjct 62794 TGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGT 62735 Query 283076 CAAAGTCTTAACGAA 283090 ||||||||| || || Sbjct 62734 CAAAGTCTTGACAAA 62720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738972007118