Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079115.1_202017-03- 21] 17 sequences; 11,883,118 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 159 8e-34 seq9 105 2e-17 >seq12 Length=1029308 Score = 159 bits (176), Expect = 8e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| || ||||| ||||| ||| || ||| Sbjct 66308 CAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCCGAC 66249 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||| ||||||||||||||||| || ||||| ||||| || Sbjct 66248 ACTATTGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAACAG 66189 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || ||||| || || || |||||||| || || |||| |||| || ||| | Sbjct 66188 AGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGAAC-CTTGTCCGACTACAACAT 66130 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||| || || | ||| | || || ||||| ||| Sbjct 66129 CCAAAAAGAGTCCACTTTACATTTAGTGTTAAGACTAAGA 66090 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || ||||| || || | || || ||| || || Sbjct 66764 CAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCTGAT 66705 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||| ||||||||||||||||| || ||||| ||||| || Sbjct 66704 ACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAACAG 66645 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || || ||||| || || || |||||||| || || || | ||||||||| | Sbjct 66644 AGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACACTGTCTGATTATAACATT 66585 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || ||||| | || ||||| | ||| Sbjct 66584 CAGAAAGAATCTACCTTGCATTTAGTGCTGAGATTGAGA 66546 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 475472 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCTTCTGAC 475531 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 475532 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAA 475591 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || || || || | |||||||| || || |||| | || || ||| | Sbjct 475592 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAAC-CTTGTCTGACTACAACAT 475650 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || |||| | || |||||| | ||| Sbjct 475651 CCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGA 475690 Score = 120 bits (132), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || || || || ||||||||||| ||| || ||| Sbjct 66080 CAGATCTTCGTTAAGACGCTGACTGGTAAGACAATAACCCTCGAGGTCGAATCTTCCGAC 66021 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| ||| ||||| || || ||||| || || || ||||| || Sbjct 66020 ACTATTGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCACCAGACCAACAG 65961 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || ||||| || |||||||| || || |||| |||| || ||| | Sbjct 65960 AGATTGATTTTTGCTGGTAAACAACTGGAAGATGGCAGAAC-CTTGTCCGACTACAACAT 65902 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| ||||| || || || || || || || Sbjct 65901 TCAAAAGGAATCTACTCTCCACCTGGTCTTAAG 65869 >seq9 Length=431692 Score = 105 bits (116), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 62719 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 62778 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| || | Sbjct 62779 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 62838 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAA 178107 ||||| || || || || | ||||| || || || |||| | || || ||| | |||| Sbjct 62839 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACATTCAAA 62897 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || | || | || |||||| | ||| Sbjct 62898 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGA 62932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730937812298