Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq15 125 5e-24 >seq15 Length=1201643 Score = 125 bits (138), Expect = 5e-24 Identities = 413/641 (64%), Gaps = 31/641 (5%) Strand=Plus/Plus Query 101542 CATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCATCTGCTTT 101601 ||| | ||||| |||| | ||||| || ||||| | ||| | | | ||| || || Sbjct 565149 CATTTTCATTTGAATTCTTGGGTGAGGATTATAATCTTCAATTTCGAAGTCTTCCAACTT 565208 Query 101602 AAAGTCATCAATGCATGAAACATTTCTAGCAAATCTA-AGTGTTGGAAACGGTCTAGGAG 101660 || ||||||||| | | | || | ||||| ||| | ||||| ||||| ||| Sbjct 565209 GAAATCATCAATGTCTTTTATGTCCCTT-CTAATCTTTAGTTTCGGAAATGGTCTTGGAT 565267 Query 101661 TTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCATCTCCTA 101720 || || | || ||| | || |||||||| || ||| | || ||||| || | Sbjct 565268 CTCTGGTGATTTGTTCTTTCAAGGCTTCAATGTGGTCCTTATAAACATGTGCATCCCCCA 565327 Query 101721 TAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAA 101780 |||||| |||||||| || ||| | | | || | ||||||||| | ||| || | Sbjct 565328 GAGTATGAATAAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACA 565387 Query 101781 GAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACA 101840 ||| ||| ||||| |||||||| || || |||||||| ||| || | ||| || | Sbjct 565388 GAGCATATGATGCAATATTAAATGGTACGCCCAACCCCATGTCACAAGAACGTTGGTATA 565447 Query 101841 GTTGACAGGAAAG------CTTTCCA------------TC---------ACAGACATAAA 101873 ||| ||||| ||| ||| || || |||||||| Sbjct 565448 ACAAACATGAAAGGTGGGGCTTACCAGATCCGTCTCCTTCTTTGGGGAAACTGACATAAA 565507 Query 101874 ATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAG 101933 |||| || | || || || ||||| |||| || || || | ||||||| Sbjct 565508 ATTGTGAGAAAATGTGGCATGGTGGCAAAGCCATCTTGTCAAAATCAGCTGGGTTCCAAG 565567 Query 101934 CACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTA 101993 ||| ||| | || |||||||| ||| ||||| |||| ||| ||| | ||| || | Sbjct 565568 CACTCATAATAATTCTTCTATCATAAGGATTTGTCTTTAGTTTATGAATGACCTGCTTCA 565627 Query 101994 ATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCT-TTATATTCTGCTCCGAAA 102052 |||| |||| || | ||| ||| ||| || || | || |||| || |||||| Sbjct 565628 ATTGATCAATACCCTGTCCAGCATAGTCGTCATCA-CAGGTCTTGTATTTAGCACCGAAA 565686 Query 102053 TGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCA 102112 |||||||| || |||||||| || || || | ||| || | | ||| || || || Sbjct 565687 TGCCTCCATTGGAATCCATAAACGGGCCCTAAATCCCCCACTTTTCTATCTGTGAACCCC 565746 Query 102113 AGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 | ||||||| | || | |||||||| | |||||||| Sbjct 565747 ATCTTATCTAGATATTCACGGGATCCATTACCGTCCCAAAT 565787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361251125153267